Click here to switch to the map view.

The map label for this gene is trpS [H]

Identifier: 148381274

GI number: 148381274

Start: 3549941

End: 3550939

Strand: Reverse

Name: trpS [H]

Synonym: CBO3331

Alternate gene names: 148381274

Gene position: 3550939-3549941 (Counterclockwise)

Preceding gene: 148381275

Following gene: 148381272

Centisome position: 91.36

GC content: 29.33

Gene sequence:

>999_bases
ATGGAAGATAATAAAAAGGTTATATTTAGTGGAATTCAACCTTCCGGAAATTTAACTTTAGGTAATTATTTAGGTGCATT
GAAAAACTGGGTTAAGCTACAAGATGAATATGATTGTTACTATTGCGTAGTAGACTTACATGCTATAACAGTAAGACAAG
AACCTAAAGATTTAAGAAGAAGAACTTTAGAGGTATTAGCAATATATATAGCTTCAGGTATAGATCCTGATAAAAATACT
ATATTTATACAATCACATGTACCTACTCATTGTGAAGCTGGGTGGCTTTTAAACTGTAACACATATATAGGAGAATTATT
TAGAATGACTCAGTATAAAGATAAATCTCAACGCTATGGGGAATCTGTAAGTGCAGGGTTATTAACTTATCCAGTTCTAA
TGGCTGCGGATATATTATTATATAATACAGATTTGGTACCAGTAGGTAAAGACCAAAAACAACATTTAGAAATAACAAGA
GACTTAGCTCAAAGATTTAATAATTTATATAGTCCAACTTTTAAAATGCCAGATCCATATATACCAGAAGCTGGAGCTAA
AATAATGGATCTTCAAGATCCAACTAAAAAAATGTCTAAGTCATCAGATAATGAAAATTCATATATATTAATTATGGATC
CACCAGATGCTATAAGAAGAAAAATTAATAGGTGTGTAACAGATAGTTTAGGAATAGTTAAATATACAGATGATCAGCCA
GGAATTAAAAATTTAATGACAATATTAAGTACAATAACTGGTATGGCTATGGAAGATATAGAAAAGAAATATGAAGGAAA
AGGATATGCTCAATTCAAGAATGATGTAGCAGAAGCTATAATTTCAGAATTGGAACCAATTCAAAACAAGGTAAATGAAT
TATTAACTAATAAAGAATACTTGGAATCTATATATAAAGAAGGAGCGGAAAAAGCTTATAAAGTATCCTATAAAATGCTA
AGAAAAATGCAAAAAAAGATAGGATTTATACCAAGGTAG

Upstream 100 bases:

>100_bases
TTTCTTGAATATAGGTGGTACCGCGATAATTCGCCCTATAACTTTTGTTATAGGGTTTTTTTATATATTTTTTTAAAATG
AAATAAATGGAGGTAGAGGT

Downstream 100 bases:

>100_bases
AATAAACAGAGTTCTTGGCTTTAGAGCGGGTAGTCATCGGATAAATTTTTATAAAAATAAAAAGTTTTCATTATACTTAT
GAAAACTTTTTGTTTTTTAT

Product: tryptophanyl-tRNA synthetase

Products: NA

Alternate protein names: Tryptophan--tRNA ligase; TrpRS [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MEDNKKVIFSGIQPSGNLTLGNYLGALKNWVKLQDEYDCYYCVVDLHAITVRQEPKDLRRRTLEVLAIYIASGIDPDKNT
IFIQSHVPTHCEAGWLLNCNTYIGELFRMTQYKDKSQRYGESVSAGLLTYPVLMAADILLYNTDLVPVGKDQKQHLEITR
DLAQRFNNLYSPTFKMPDPYIPEAGAKIMDLQDPTKKMSKSSDNENSYILIMDPPDAIRRKINRCVTDSLGIVKYTDDQP
GIKNLMTILSTITGMAMEDIEKKYEGKGYAQFKNDVAEAIISELEPIQNKVNELLTNKEYLESIYKEGAEKAYKVSYKML
RKMQKKIGFIPR

Sequences:

>Translated_332_residues
MEDNKKVIFSGIQPSGNLTLGNYLGALKNWVKLQDEYDCYYCVVDLHAITVRQEPKDLRRRTLEVLAIYIASGIDPDKNT
IFIQSHVPTHCEAGWLLNCNTYIGELFRMTQYKDKSQRYGESVSAGLLTYPVLMAADILLYNTDLVPVGKDQKQHLEITR
DLAQRFNNLYSPTFKMPDPYIPEAGAKIMDLQDPTKKMSKSSDNENSYILIMDPPDAIRRKINRCVTDSLGIVKYTDDQP
GIKNLMTILSTITGMAMEDIEKKYEGKGYAQFKNDVAEAIISELEPIQNKVNELLTNKEYLESIYKEGAEKAYKVSYKML
RKMQKKIGFIPR
>Mature_332_residues
MEDNKKVIFSGIQPSGNLTLGNYLGALKNWVKLQDEYDCYYCVVDLHAITVRQEPKDLRRRTLEVLAIYIASGIDPDKNT
IFIQSHVPTHCEAGWLLNCNTYIGELFRMTQYKDKSQRYGESVSAGLLTYPVLMAADILLYNTDLVPVGKDQKQHLEITR
DLAQRFNNLYSPTFKMPDPYIPEAGAKIMDLQDPTKKMSKSSDNENSYILIMDPPDAIRRKINRCVTDSLGIVKYTDDQP
GIKNLMTILSTITGMAMEDIEKKYEGKGYAQFKNDVAEAIISELEPIQNKVNELLTNKEYLESIYKEGAEKAYKVSYKML
RKMQKKIGFIPR

Specific function: Unknown

COG id: COG0180

COG function: function code J; Tryptophanyl-tRNA synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI7710154, Length=331, Percent_Identity=40.785498489426, Blast_Score=276, Evalue=1e-74,
Organism=Homo sapiens, GI41352700, Length=178, Percent_Identity=50.561797752809, Blast_Score=191, Evalue=7e-49,
Organism=Escherichia coli, GI1789786, Length=332, Percent_Identity=53.0120481927711, Blast_Score=392, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI71982800, Length=332, Percent_Identity=35.5421686746988, Blast_Score=200, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71982793, Length=332, Percent_Identity=35.5421686746988, Blast_Score=198, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6320474, Length=344, Percent_Identity=39.8255813953488, Blast_Score=226, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24666151, Length=325, Percent_Identity=38.4615384615385, Blast_Score=241, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001412
- InterPro:   IPR002305
- InterPro:   IPR014729
- InterPro:   IPR002306 [H]

Pfam domain/function: PF00579 tRNA-synt_1b [H]

EC number: =6.1.1.2 [H]

Molecular weight: Translated: 37956; Mature: 37956

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDNKKVIFSGIQPSGNLTLGNYLGALKNWVKLQDEYDCYYCVVDLHAITVRQEPKDLRR
CCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEEEEHEEECCCHHHHHH
RTLEVLAIYIASGIDPDKNTIFIQSHVPTHCEAGWLLNCNTYIGELFRMTQYKDKSQRYG
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHC
ESVSAGLLTYPVLMAADILLYNTDLVPVGKDQKQHLEITRDLAQRFNNLYSPTFKMPDPY
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IPEAGAKIMDLQDPTKKMSKSSDNENSYILIMDPPDAIRRKINRCVTDSLGIVKYTDDQP
CCCCCCEEECCCCHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
GIKNLMTILSTITGMAMEDIEKKYEGKGYAQFKNDVAEAIISELEPIQNKVNELLTNKEY
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LESIYKEGAEKAYKVSYKMLRKMQKKIGFIPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEDNKKVIFSGIQPSGNLTLGNYLGALKNWVKLQDEYDCYYCVVDLHAITVRQEPKDLRR
CCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEEEEHEEECCCHHHHHH
RTLEVLAIYIASGIDPDKNTIFIQSHVPTHCEAGWLLNCNTYIGELFRMTQYKDKSQRYG
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHC
ESVSAGLLTYPVLMAADILLYNTDLVPVGKDQKQHLEITRDLAQRFNNLYSPTFKMPDPY
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IPEAGAKIMDLQDPTKKMSKSSDNENSYILIMDPPDAIRRKINRCVTDSLGIVKYTDDQP
CCCCCCEEECCCCHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
GIKNLMTILSTITGMAMEDIEKKYEGKGYAQFKNDVAEAIISELEPIQNKVNELLTNKEY
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LESIYKEGAEKAYKVSYKMLRKMQKKIGFIPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]