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The map label for this gene is recO [H]

Identifier: 148380896

GI number: 148380896

Start: 3136191

End: 3136934

Strand: Reverse

Name: recO [H]

Synonym: CBO2945

Alternate gene names: 148380896

Gene position: 3136934-3136191 (Counterclockwise)

Preceding gene: 148380897

Following gene: 148380895

Centisome position: 80.7

GC content: 25.81

Gene sequence:

>744_bases
CTGTCACTATATAAAACTAGGGCTGTAGTAATAAAAACTCAAGAATTTAAAGAAGCAGATAAATTAGTTTGGTTATATAC
AGAAAAATTAGGTAAAATAACTGCTATAGCAAAAGGTGCAAAAAAAAATAGAAGTAAATATTTATCTAATACATCACCCT
TTTGTTATGGAGAATATGTATTATATAAGGGGAAAAGTTTATTTAATTTATCAGAAGTCCAGTTAATAGATTCCTTTCAG
GACTTTTTAAGAGATTTAGATACATTAACTTATGGATCCTATTTTTGTGAACTAATAGATATATGTACAGAAGAAAAAGA
AAGTAGTAGAGAATTATTTCAAGAGCTAGTTAAAAGTTTATTCTTGATGAAGAATAAAGTGGTAGATATTGAGATTTTGG
CTAGAGCTTTTGAAATGAAAGTATTAAAATACACTGGATATGCTTTGAATTTTAATCATTGTGTAGAGTGTGGAAGGAAA
ATAGAAACTTCAAATTATATAAGTTTGCAGAGCCTAGGAGGAATATGTAATTATTGTAACAAGATAAATGGTATAGGAGT
AACTTATGCTACTTATAATATATTAAAATATATATATGCAGCTCCATTAGAAAAGCTTTATAGGCTTTCTGTTGATACAG
AAACTAAAAAGGATATTTATAAAATTTTAAATACCATAATAAATCAAAATTATTTGAAGAAACCCAAAAGTCTCCAAATA
TTAAATTATATAAAGGAGGAATAA

Upstream 100 bases:

>100_bases
AAGTAAAAGAAGAGTGGAGAGATAACCAAAGTTTATTAAAAGAATTAGGTTATAAAAATATGAAATAGAACTGAAATAAA
TAATATAGGGAGTTGATTTT

Downstream 100 bases:

>100_bases
AAATGGAAATAACATTAGAAAAAATTGATATCATAAGGGAAAGGACTGGAGCAACTTACACTGAAGCTAAAGAAGCTTTA
GAAGCTTGTGACGGAAATGT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSLYKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYVLYKGKSLFNLSEVQLIDSFQ
DFLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSLFLMKNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRK
IETSNYISLQSLGGICNYCNKINGIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKILNTIINQNYLKKPKSLQI
LNYIKEE

Sequences:

>Translated_247_residues
MSLYKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYVLYKGKSLFNLSEVQLIDSFQ
DFLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSLFLMKNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRK
IETSNYISLQSLGGICNYCNKINGIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKILNTIINQNYLKKPKSLQI
LNYIKEE
>Mature_246_residues
SLYKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYVLYKGKSLFNLSEVQLIDSFQD
FLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSLFLMKNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRKI
ETSNYISLQSLGGICNYCNKINGIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKILNTIINQNYLKKPKSLQIL
NYIKEE

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 28672; Mature: 28540

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00392 DDC_GAD_HDC_YDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYV
CCCCCCCEEEEECHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEE
LYKGKSLFNLSEVQLIDSFQDFLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLMKNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRKIETSNYISLQSLGGICNYCN
HHHHCCCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCCCCCCEEHHHHHHHHHHHH
KINGIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKILNTIINQNYLKKPKSLQI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCHHHH
LNYIKEE
HHHHHCC
>Mature Secondary Structure 
SLYKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYV
CCCCCCEEEEECHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEE
LYKGKSLFNLSEVQLIDSFQDFLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLMKNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRKIETSNYISLQSLGGICNYCN
HHHHCCCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCCCCCCEEHHHHHHHHHHHH
KINGIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKILNTIINQNYLKKPKSLQI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCHHHH
LNYIKEE
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]