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The map label for this gene is rnc [H]

Identifier: 148380412

GI number: 148380412

Start: 2588145

End: 2588858

Strand: Reverse

Name: rnc [H]

Synonym: CBO2454

Alternate gene names: 148380412

Gene position: 2588858-2588145 (Counterclockwise)

Preceding gene: 148380413

Following gene: 148380411

Centisome position: 66.6

GC content: 29.27

Gene sequence:

>714_bases
GTGAAAATTTTGAAAAATAGACAGGATGTTTTAAAAGAACTTCAGTATAAACTTAAAGTATATTTTAAAAATGAAAAGTT
ATTAGATGTGGCATTAACTCATAGTTCCTATGCTAATGGTAAAAAAAATATAAAATATTATGAAAGATTGGAGTTCTTGG
GAGATTCCGTATTGCAGCTTATAATATCAGAGCATTTATATCAAAAATATGAAGATAAAAAAGAAGGAGAGCTTACAAGG
AAGAGAGCTATAATAGTTTGCGAAAATTCTCTTTATGAAATAGCTAAAAGATGGGATTTAGGTTTTTATCTACAAATGAG
TAAAGGGGAAGAATTAACAGGAGGCAGAGAAAGGGTATCTATATTAGCAGATTGTGTAGAGTCTATAATAGCTGCTATAT
ATTTAGATAAAGGATTAGATCATGCGAGAGAATTTGTTATGAAAAATTTCAAAGAAATAATAGAAAAAGCTATGAAAGAT
GAAATAATATTAGATTACAAAACTACATTGCAAGAAATAGTGCAACAAAATAATGATCTCACTATAAACTATGAATTATT
AAAACAGGAAGGTCCTCCTCACAGAAGAAGGTTCTTTACTAATGTAACCATAGATAATGAGGTAAGAGGAACTGGAATAG
GCTATAGTAAAAAAGAAGCAGAACAAAACGCAGCAAGAGAAGCATTAAAGAATTTAGGTGATAGCCATGAGTAA

Upstream 100 bases:

>100_bases
GATTTTTATCCCCGCCTTTATTAGCGGGGATTTTATATTAAAAGATAAGTTTATTCTTGAGTTTATTTAATAAATACACT
GAAGAATGAACTTCTAGGGA

Downstream 100 bases:

>100_bases
AAGCTATTATATAATACCAATATTCGTTGCTCAGGAAGGATGTCCACATAATTGTGTTTTTTGTAATCAATATAAAATAA
CCGGGGAAAAGGATGAAATG

Product: ribonuclease III

Products: NA

Alternate protein names: Ribonuclease III; RNase III [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKILKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTR
KRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKD
EIILDYKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDSHE

Sequences:

>Translated_237_residues
MKILKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTR
KRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKD
EIILDYKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDSHE
>Mature_237_residues
MKILKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTR
KRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKD
EIILDYKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDSHE

Specific function: Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs [H]

COG id: COG0571

COG function: function code K; dsRNA-specific ribonuclease

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

Organism=Homo sapiens, GI155030234, Length=226, Percent_Identity=29.2035398230088, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI155030236, Length=226, Percent_Identity=29.2035398230088, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1788920, Length=228, Percent_Identity=35.9649122807018, Blast_Score=119, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17506883, Length=225, Percent_Identity=30.2222222222222, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193202651, Length=225, Percent_Identity=30.2222222222222, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17137682, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001159
- InterPro:   IPR014720
- InterPro:   IPR000999
- InterPro:   IPR011907 [H]

Pfam domain/function: PF00035 dsrm; PF00636 Ribonuclease_3 [H]

EC number: =3.1.26.3 [H]

Molecular weight: Translated: 27690; Mature: 27690

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50137 DS_RBD ; PS00517 RNASE_3_1 ; PS50142 RNASE_3_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQL
CCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
IISEHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVS
HHHHHHHHHHCCHHHCHHHHHHEEEEECHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHHHCCCCE
TINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDSHE
EEEEEEECCCCCCHHHHEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKILKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQL
CCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
IISEHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVS
HHHHHHHHHHCCHHHCHHHHHHEEEEECHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHHHCCCCE
TINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDSHE
EEEEEEECCCCCCHHHHEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]