Click here to switch to the map view.

The map label for this gene is xtmB [H]

Identifier: 148379681

GI number: 148379681

Start: 1840851

End: 1842110

Strand: Direct

Name: xtmB [H]

Synonym: CBO1722

Alternate gene names: 148379681

Gene position: 1840851-1842110 (Clockwise)

Preceding gene: 148379680

Following gene: 148379682

Centisome position: 47.36

GC content: 31.35

Gene sequence:

>1260_bases
ATGAATAAAATTAAGTTAAAATCAATAATAGCTTCTAGTTTTTATGAAGCACATAAAGATATTAAGAAGGGACTTCACAC
TCACTACTGGTTCAAAGGTGGTAGAGGTAGTACGAAGTCCTCTTTTATTTCTATAGAAATAGTATTGGGAATAATGAGAG
ATGCACAAGAAGGTAAATTAACTAATGCCCTAATATTAAGAAGAGTAAAAGATACTTTATCGGAATCAGTTAGAGATCAA
ATTAAATGGGCTATAGATATATTAGGAGTAAGTGATGAATGGCATATACCAGAAGCTAAACTAACCATAACATATAAACC
TACAGGCCAAGTGATTAGATTTAAAGGTGCTGATAACCCTAAGAAAGTTAAGTCTACAAAGGTACCAAAGGGATATATTA
AATATATTTGGTATGAAGAAGTAGATGAGTTTGAGGGTAAAAATAAAATAGATACAATAAATCAATCATTAATGAGAGGT
GGACCTAAGTTCTTTGTATTCTATTCTTTCAACCCTCCAGAATCACAAAGGAATTGGTGCAACCAGGAAGTGGTTGAAAC
TAGAAAGGATAAGTATGTTCATCATAGTGATTATAGGTTAGTACCTATAGAATGGTTAGGTGAGCAATTTATAATTGAAG
CAGAGCATATGAAGAAAGTTAATCCTGCAAAATATGAACATGATTACTTAGGAGCAGTTACTGGTACAGGTGGAGAAGTA
TTTAGAAATCTAACTATTAGAGAATTAACAGATGAAGAAATCAAAGTATTTGATAGATTAAAAAATGGATTAGACTTTGG
TTATGCTGCTGATCCATTAGCTTATGTTCTTATGCATTATGATAAAACTAGGAAAAGATTATATATCTTTGATGAAATCT
ATAAGGTTCAATTAAGTAACAGCAAGGCGGTAAAAGAGATTAAAAAATTAAATCCACTAAATAAGAGAGTCATAGCAGAT
AGTGCAGAACCTAGAACTATAAATGAATTTAAGACATTAGGACTTAATATTAAAGGAGCTAAGAAAGGGCCAGATAGTGT
TGAGCATGGAATTAAGTTCTTAAGTGAAGAAATAGAAGAAATAATAATAGATCCTATTAGATGCCCTAATGCTAAAAGAG
AATTTATAGGGTATGAAATAGAAAAAGACAAAGATGGGAACCTGAAAGGAGAATATCCCGATAAAGATAATCACACTATA
GATGCTGCTAGATATGGTATGGAAGATGAAATAAGAGGAAGTAGTATTTCGTTTGACTAA

Upstream 100 bases:

>100_bases
AGAATAAAAGCTGCTGAATTATTAGGTAAAAGGTATAGACTATTCACTGATAAAGTTGAAATAGAGGGTTCTGTTCCAGT
GCAAATAGTAGATGATATAG

Downstream 100 bases:

>100_bases
GGAGGTGTTATAGATGATATTTATAGATAAAATACTTAATAGTGGATCTAATTCAGTAATGACTACAGAAGAAATTATCC
AGGAAGAAATTAAAGAATGG

Product: terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MNKIKLKSIIASSFYEAHKDIKKGLHTHYWFKGGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVKDTLSESVRDQ
IKWAIDILGVSDEWHIPEAKLTITYKPTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRG
GPKFFVFYSFNPPESQRNWCNQEVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEV
FRNLTIRELTDEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSNSKAVKEIKKLNPLNKRVIAD
SAEPRTINEFKTLGLNIKGAKKGPDSVEHGIKFLSEEIEEIIIDPIRCPNAKREFIGYEIEKDKDGNLKGEYPDKDNHTI
DAARYGMEDEIRGSSISFD

Sequences:

>Translated_419_residues
MNKIKLKSIIASSFYEAHKDIKKGLHTHYWFKGGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVKDTLSESVRDQ
IKWAIDILGVSDEWHIPEAKLTITYKPTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRG
GPKFFVFYSFNPPESQRNWCNQEVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEV
FRNLTIRELTDEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSNSKAVKEIKKLNPLNKRVIAD
SAEPRTINEFKTLGLNIKGAKKGPDSVEHGIKFLSEEIEEIIIDPIRCPNAKREFIGYEIEKDKDGNLKGEYPDKDNHTI
DAARYGMEDEIRGSSISFD
>Mature_419_residues
MNKIKLKSIIASSFYEAHKDIKKGLHTHYWFKGGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVKDTLSESVRDQ
IKWAIDILGVSDEWHIPEAKLTITYKPTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRG
GPKFFVFYSFNPPESQRNWCNQEVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEV
FRNLTIRELTDEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSNSKAVKEIKKLNPLNKRVIAD
SAEPRTINEFKTLGLNIKGAKKGPDSVEHGIKFLSEEIEEIIIDPIRCPNAKREFIGYEIEKDKDGNLKGEYPDKDNHTI
DAARYGMEDEIRGSSISFD

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 48341; Mature: 48341

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIKLKSIIASSFYEAHKDIKKGLHTHYWFKGGRGSTKSSFISIEIVLGIMRDAQEGKL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEHHHHHHCCCCCCH
TNALILRRVKDTLSESVRDQIKWAIDILGVSDEWHIPEAKLTITYKPTGQVIRFKGADNP
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCH
KKVKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRGGPKFFVFYSFNPPESQRNWC
HHHHCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHC
NQEVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEV
CHHHHHHHHHCCEECCCCEEEEHHHCCCHHEEEHHHHCCCCCCCCCCCCCEEEECCCHHH
FRNLTIRELTDEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSN
HHCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECC
SKAVKEIKKLNPLNKRVIADSAEPRTINEFKTLGLNIKGAKKGPDSVEHGIKFLSEEIEE
CHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHH
IIIDPIRCPNAKREFIGYEIEKDKDGNLKGEYPDKDNHTIDAARYGMEDEIRGSSISFD
HHCCCCCCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCEEHHHHCCCCHHCCCCCCCCC
>Mature Secondary Structure
MNKIKLKSIIASSFYEAHKDIKKGLHTHYWFKGGRGSTKSSFISIEIVLGIMRDAQEGKL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEHHHHHHCCCCCCH
TNALILRRVKDTLSESVRDQIKWAIDILGVSDEWHIPEAKLTITYKPTGQVIRFKGADNP
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCH
KKVKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRGGPKFFVFYSFNPPESQRNWC
HHHHCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHC
NQEVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEV
CHHHHHHHHHCCEECCCCEEEEHHHCCCHHEEEHHHHCCCCCCCCCCCCCEEEECCCHHH
FRNLTIRELTDEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSN
HHCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECC
SKAVKEIKKLNPLNKRVIADSAEPRTINEFKTLGLNIKGAKKGPDSVEHGIKFLSEEIEE
CHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHH
IIIDPIRCPNAKREFIGYEIEKDKDGNLKGEYPDKDNHTIDAARYGMEDEIRGSSISFD
HHCCCCCCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCEEHHHHCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]