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The map label for this gene is nudL [H]

Identifier: 148379381

GI number: 148379381

Start: 1532214

End: 1532837

Strand: Direct

Name: nudL [H]

Synonym: CBO1405

Alternate gene names: 148379381

Gene position: 1532214-1532837 (Clockwise)

Preceding gene: 148379379

Following gene: 148379383

Centisome position: 39.42

GC content: 27.56

Gene sequence:

>624_bases
ATGAAAAGAGAGTTAATAGATACAGTATATGAAAAATTTGAATATAGAAAAGCAAAGCCTATAGGTAATTTCAAAAGAAG
TTCAGTAATGATATTATTAAATAAAGTAGGTACAAATATTAATATAATATTTGAAGTAAGAGCATTAACTTTAAAAAATC
AACCAGGAGATGTTTGTCTGCCAGGTGGAAAAATGGAAAAGGGAGAAAGACCTCTAGAAGCAGCTTTAAGAGAAACTGTA
GAAGAACTTAATATAGATAAAGAAAAAATAAAGGTAATAGGACAAATGGATTATTTCATTAGTCCATATAATTTTGTGAT
ATATCCTTTTGTCGCGATAGTGGAAGATATAGATATAGCTCCTGATAAAGAGGAAGTAGATCACGTATTTGAAGTGCCTA
TAGAGTTTTTTTTAGAAAATTTACCTACTTGTTACGAAATAGATATAGTACCTAGTATAACAGGAGATTTCCCTTTTTCT
CTTATAAGAAATGGTAAAAACTATAAATTTAGTAAGGGAACTATCCCTGAATATTTCTATGAATATGAAGGTAATGTTAT
ATGGGGATTTACAGCGCTTATTGTAAAAAATTTTATAGATATAATTAAGGACAAAAAAAATTAA

Upstream 100 bases:

>100_bases
ATTTATAATGATACCATGAAACAGAAAGAAATTATTAAATATTCAGTAATAAATAAGTACCTAGCTTTAATTTAGGTATA
AATTATTTTTAGGAGGAACC

Downstream 100 bases:

>100_bases
TAAAAGTATATTAAATATTCCACCAACTTTTAATTAGTTGGTGGAATGTTTTAAATGCTTTTTTCCTGTTTTTTCATACC
AGCTATTGCAACTGATATAA

Product: pyrophosphatase, MutT/nudix family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKRELIDTVYEKFEYRKAKPIGNFKRSSVMILLNKVGTNINIIFEVRALTLKNQPGDVCLPGGKMEKGERPLEAALRETV
EELNIDKEKIKVIGQMDYFISPYNFVIYPFVAIVEDIDIAPDKEEVDHVFEVPIEFFLENLPTCYEIDIVPSITGDFPFS
LIRNGKNYKFSKGTIPEYFYEYEGNVIWGFTALIVKNFIDIIKDKKN

Sequences:

>Translated_207_residues
MKRELIDTVYEKFEYRKAKPIGNFKRSSVMILLNKVGTNINIIFEVRALTLKNQPGDVCLPGGKMEKGERPLEAALRETV
EELNIDKEKIKVIGQMDYFISPYNFVIYPFVAIVEDIDIAPDKEEVDHVFEVPIEFFLENLPTCYEIDIVPSITGDFPFS
LIRNGKNYKFSKGTIPEYFYEYEGNVIWGFTALIVKNFIDIIKDKKN
>Mature_207_residues
MKRELIDTVYEKFEYRKAKPIGNFKRSSVMILLNKVGTNINIIFEVRALTLKNQPGDVCLPGGKMEKGERPLEAALRETV
EELNIDKEKIKVIGQMDYFISPYNFVIYPFVAIVEDIDIAPDKEEVDHVFEVPIEFFLENLPTCYEIDIVPSITGDFPFS
LIRNGKNYKFSKGTIPEYFYEYEGNVIWGFTALIVKNFIDIIKDKKN

Specific function: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives [H]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17536993, Length=113, Percent_Identity=32.7433628318584, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR000059 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 23966; Mature: 23966

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRELIDTVYEKFEYRKAKPIGNFKRSSVMILLNKVGTNINIIFEVRALTLKNQPGDVCL
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCEEEEEEEEEEEECCCCCCEEE
PGGKMEKGERPLEAALRETVEELNIDKEKIKVIGQMDYFISPYNFVIYPFVAIVEDIDIA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
PDKEEVDHVFEVPIEFFLENLPTCYEIDIVPSITGDFPFSLIRNGKNYKFSKGTIPEYFY
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEECCCCCHHHHH
EYEGNVIWGFTALIVKNFIDIIKDKKN
HCCCCEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRELIDTVYEKFEYRKAKPIGNFKRSSVMILLNKVGTNINIIFEVRALTLKNQPGDVCL
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCEEEEEEEEEEEECCCCCCEEE
PGGKMEKGERPLEAALRETVEELNIDKEKIKVIGQMDYFISPYNFVIYPFVAIVEDIDIA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
PDKEEVDHVFEVPIEFFLENLPTCYEIDIVPSITGDFPFSLIRNGKNYKFSKGTIPEYFY
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEECCCCCHHHHH
EYEGNVIWGFTALIVKNFIDIIKDKKN
HCCCCEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]