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The map label for this gene is atpD

Identifier: 148361322

GI number: 148361322

Start: 3551931

End: 3553307

Strand: Reverse

Name: atpD

Synonym: LPC_3297

Alternate gene names: 148361322

Gene position: 3553307-3551931 (Counterclockwise)

Preceding gene: 148361323

Following gene: 148361321

Centisome position: 99.35

GC content: 43.36

Gene sequence:

>1377_bases
ATGAGCTTAGGAACTGTGGTAGAAGTAATTGGTGCGGTAGTTGACGTAGAATTTCCTCGTGATAGCGTGCCTAAAGTCAA
TGATGCGTTAAAGCTTGTTGATAGTGATCTGGTTTTTGAAGTGCAGCAGCAACTTGGAGACGGAGTTGTGCGTACTATTG
CCATGGGAACAACCGATGGTTTAAAGCGAGGATTAAAAGCAGAAAATACAGGCCATCCTATTCAAGTGCCAGTAGGTAAG
AAAACTTTGGGACGCATTATGGATGTTCTTGGGCGTCCTGTAGATGATGCTGGGCCTATCGATGCTGAAGAGACTTGGGC
TATTCATCGTAAAGCACCAAGTTATGAAGAGCAAGCTGGCAGCCAGGAATTATTAGAAACTGGTATTAAAGTAATTGATT
TGCTTTGCCCTTTTGCCAAGGGAGGTAAAGTTGGTCTATTCGGTGGTGCCGGTGTAGGTAAAACCGTTAACATGATGGAA
TTAATACGAAACATTGCAATTGAGCATAGCGGTTATTCAGTGTTTGCAGGGGTTGGTGAACGTACCCGTGAAGGAAACGA
CTTCTATCATGAGATGAAAGACTCTAATGTATTGGATAAAGTATCGCTTGTTTATGGTCAGATGAATGAGCCGCCAGGAA
ACCGTTTGCGTGTTGCTCTAACCGGTTTGACCATGGCTGAAAAATTCCGGGATGAAGGGCGAGACGTTCTTTTGTTTATC
GATAATATTTATCGTTATACCCTGGCTGGGGTTGAAGTATCTGCGCTGTTAGGCCGTATGCCTTCTGCAGTAGGATATCA
GCCGACATTAGCAGAGGAAATGGGTATGCTGCAGGAGCGCATTACCTCCACAAAAACTGGTTCTATTACTTCTATACAAG
CAGTATATGTACCTGCAGACGACTTGACTGACCCATCACCAGCTACAACCTTTGCACACTTGGATGCTACTGTAGTATTG
TCCCGTCAAATTGCTGAATTAGGTATTTATCCTGCGGTTGATCCGCTTGATTCAACATCACGTCAGCTGGATCCTTTGAT
TGTAGGTCAGGAGCATTACGACACCGCACGTCGTGTACAGCAAACCTTGCAACGATATAAAGAATTAAAAGATATTATTG
CAATTTTGGGTATGGATGAACTGTCTGAGGAAGACAAACGAGTTGTAACTCGGGCTCGTAAAATCCAAAGATTCTTGTCT
CAGCCATTCTTCGTTGCGGAAGTGTTTACAGGTTCTCCTGGTAAATACGTATCGCTTAAAGATACTATCAAAGGTTTCCA
AGGCATTCTTGCCGGTGAATATGATGATTTGCCTGAACAGGCATTTTATATGGTTGGAAGCATCGAGGAAGCTGTTGCAA
AAGCTAAAACCTTATGA

Upstream 100 bases:

>100_bases
AGAATTTCAATTGGCTTATAACAAAGCCCGACAAGCAGCCATTACTCAAGAGTTGGCAGAAATTGTCGGTGGCGCAGCCG
CTTTATAAAGAGGGTATATA

Downstream 100 bases:

>100_bases
GGCAAGATAATATGAGTATTACAACGCACTTGGATATTGTTAGTGCAGAGCATGAAATTTTCTCTGGTGTGGTGGAAATG
GTAGTTGCAACTGGAGAATT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGK
KTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFI
DNIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVL
SRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKDIIAILGMDELSEEDKRVVTRARKIQRFLS
QPFFVAEVFTGSPGKYVSLKDTIKGFQGILAGEYDDLPEQAFYMVGSIEEAVAKAKTL

Sequences:

>Translated_458_residues
MSLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGK
KTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFI
DNIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVL
SRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKDIIAILGMDELSEEDKRVVTRARKIQRFLS
QPFFVAEVFTGSPGKYVSLKDTIKGFQGILAGEYDDLPEQAFYMVGSIEEAVAKAKTL
>Mature_457_residues
SLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGKK
TLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFID
NIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLS
RQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKDIIAILGMDELSEEDKRVVTRARKIQRFLSQ
PFFVAEVFTGSPGKYVSLKDTIKGFQGILAGEYDDLPEQAFYMVGSIEEAVAKAKTL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=70.6896551724138, Blast_Score=643, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=323, Percent_Identity=27.5541795665635, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913428, Length=384, Percent_Identity=24.7395833333333, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI19913426, Length=390, Percent_Identity=24.1025641025641, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=25.4125412541254, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=25.4125412541254, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=85.8695652173913, Blast_Score=806, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=315, Percent_Identity=31.4285714285714, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1790172, Length=382, Percent_Identity=24.6073298429319, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=464, Percent_Identity=68.1034482758621, Blast_Score=623, Evalue=1e-179,
Organism=Caenorhabditis elegans, GI17565854, Length=326, Percent_Identity=28.2208588957055, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17570191, Length=418, Percent_Identity=25.1196172248804, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=369, Percent_Identity=25.4742547425474, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=367, Percent_Identity=24.2506811989101, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=367, Percent_Identity=24.2506811989101, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=367, Percent_Identity=23.433242506812, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=68.0525164113786, Blast_Score=624, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=424, Percent_Identity=26.6509433962264, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=26.0869565217391, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6320016, Length=259, Percent_Identity=25.8687258687259, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=69.3965517241379, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=64.5161290322581, Blast_Score=591, Evalue=1e-169,
Organism=Drosophila melanogaster, GI281361666, Length=395, Percent_Identity=25.5696202531646, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24646341, Length=395, Percent_Identity=25.5696202531646, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136796, Length=395, Percent_Identity=25.5696202531646, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=26.9938650306748, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI20129479, Length=336, Percent_Identity=26.7857142857143, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583988, Length=326, Percent_Identity=26.9938650306748, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583986, Length=326, Percent_Identity=26.9938650306748, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583984, Length=326, Percent_Identity=26.9938650306748, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24658560, Length=367, Percent_Identity=24.5231607629428, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=52.7472527472528, Blast_Score=89, Evalue=9e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_LEGPA (Q5X0P3)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_125355.1
- ProteinModelPortal:   Q5X0P3
- SMR:   Q5X0P3
- STRING:   Q5X0P3
- GeneID:   3117402
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp3053
- LegioList:   lpp3053
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   LPNE297246:LPP3053-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50027; Mature: 49896

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDG
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH
LKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAG
HHCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHEEHHCCCCCHHHHCC
SQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFI
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPAD
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
QTLQRYKELKDIIAILGMDELSEEDKRVVTRARKIQRFLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIKGFQGILAGEYDDLPEQAFYMVGSIEEAVAKAKTL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDG
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH
LKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAG
HHCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHEEHHCCCCCHHHHCC
SQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFI
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPAD
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
QTLQRYKELKDIIAILGMDELSEEDKRVVTRARKIQRFLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIKGFQGILAGEYDDLPEQAFYMVGSIEEAVAKAKTL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA