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The map label for this gene is psd [H]

Identifier: 148361314

GI number: 148361314

Start: 3539827

End: 3540678

Strand: Reverse

Name: psd [H]

Synonym: LPC_3289

Alternate gene names: 148361314

Gene position: 3540678-3539827 (Counterclockwise)

Preceding gene: 148361315

Following gene: 148361311

Centisome position: 99.0

GC content: 39.32

Gene sequence:

>852_bases
ATGTTTCGTGATGTACTGAAGACACTACCCCAATACCTTATTCCGAAACACGGTATTACTGCTTTAGCAGGGTATTTTGC
TGACGTTAAGAGCCCTCGTCTCAAGAATTTCTTAATTCGAAACTTTATTCGTAAGTTTGATGTCGATATGAGTGAGGCAC
TTATTGAAGATCCTAAGTCTTATGACTGTTTTAATGATTTCTTTATTCGTCATTTAAAGCCGGAATGCCGTCCTCTTTCT
CAGTCAGATGTGATTTGTCCAGTAGATGGTTGTATCAGCGAAATAGGCAAGATTGAACGAGGACAGTTATTGCAGGCTAA
AGGCAAATATTATTCTGTACAAGAGCTTTTAGCTTGTGACGGGCAATTGGCCGAACAATTTGTGCAAGGACAATTCGCAA
CGCTATACTTATCGCCGAAAGATTACCACAGGGTACATATGCCAATAGATGCAGAGCTCGTTTCAATGACTTATATTCCA
GGCGCTTTGTTTTCCGTTCAACCAGCAACTACACGTGTTGTTCCTAAATTGTTCGCACGAAATGAAAGGCTTGCCATTTT
TTTTAAAACGAAAATTGGTCCGATGGTGATGGTGATGGTTGGGGCTACTATTGTAGGCGCAATTGGAACCAGTTGGCATG
GTGATGTCAAAAGAGCAAAAAAATTAGAACGTTTTGATTATAGTGAGCGGTTTCCGGACAAGATTATATCTCAGGGAAGT
GAAATGGGTTATTTTAAATTGGGATCTACGGTCGTTTTATTGTTTGCAAATGGAGAAAAAATACAATGGGATAAAGAATT
ATTGGCTGGTAGCAAGATTCAGTTGGGTAAACCAATGGCAATCATTACTTAA

Upstream 100 bases:

>100_bases
TGGTTTAAATTTTCTCTGGCATGGAGATTTACTCGTCTTATTGTGACAATACAATAAGCTTTAGGTTATTATTCTCTTTT
TTCAGTTTTGAGTAAAAAGT

Downstream 100 bases:

>100_bases
TTAATGGTACCGAGAAGAGGACTCGAACCTCCACGGGGTTGCCCCCACTAGCACCTGAAGCTAGCGTGTCTACCAATTCC
ACCACCTCGGCATAGGGCGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MFRDVLKTLPQYLIPKHGITALAGYFADVKSPRLKNFLIRNFIRKFDVDMSEALIEDPKSYDCFNDFFIRHLKPECRPLS
QSDVICPVDGCISEIGKIERGQLLQAKGKYYSVQELLACDGQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIP
GALFSVQPATTRVVPKLFARNERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKRAKKLERFDYSERFPDKIISQGS
EMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLGKPMAIIT

Sequences:

>Translated_283_residues
MFRDVLKTLPQYLIPKHGITALAGYFADVKSPRLKNFLIRNFIRKFDVDMSEALIEDPKSYDCFNDFFIRHLKPECRPLS
QSDVICPVDGCISEIGKIERGQLLQAKGKYYSVQELLACDGQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIP
GALFSVQPATTRVVPKLFARNERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKRAKKLERFDYSERFPDKIISQGS
EMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLGKPMAIIT
>Mature_283_residues
MFRDVLKTLPQYLIPKHGITALAGYFADVKSPRLKNFLIRNFIRKFDVDMSEALIEDPKSYDCFNDFFIRHLKPECRPLS
QSDVICPVDGCISEIGKIERGQLLQAKGKYYSVQELLACDGQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIP
GALFSVQPATTRVVPKLFARNERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKRAKKLERFDYSERFPDKIISQGS
EMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLGKPMAIIT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=302, Percent_Identity=30.1324503311258, Blast_Score=122, Evalue=3e-28,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=44.8028673835125, Blast_Score=234, Evalue=6e-63,
Organism=Caenorhabditis elegans, GI71980840, Length=278, Percent_Identity=30.5755395683453, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71980843, Length=272, Percent_Identity=30.5147058823529, Blast_Score=113, Evalue=9e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=163, Percent_Identity=38.0368098159509, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321609, Length=276, Percent_Identity=25.7246376811594, Blast_Score=86, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=26.7326732673267, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=26.7326732673267, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=26.7326732673267, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31956; Mature: 31956

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRDVLKTLPQYLIPKHGITALAGYFADVKSPRLKNFLIRNFIRKFDVDMSEALIEDPKS
CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCC
YDCFNDFFIRHLKPECRPLSQSDVICPVDGCISEIGKIERGQLLQAKGKYYSVQELLACD
CCHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHCCCCCCCEEHHCCCCHHHHHHHHCC
GQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIPGALFSVQPATTRVVPKLFAR
HHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHEEEECCCCCEECCCHHHHHHHHHHCC
NERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKRAKKLERFDYSERFPDKIISQGS
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCHHHHHCCC
EMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLGKPMAIIT
CCCEEEECCEEEEEEECCCEEEECHHHHCCCCEECCCCEEEEC
>Mature Secondary Structure
MFRDVLKTLPQYLIPKHGITALAGYFADVKSPRLKNFLIRNFIRKFDVDMSEALIEDPKS
CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCC
YDCFNDFFIRHLKPECRPLSQSDVICPVDGCISEIGKIERGQLLQAKGKYYSVQELLACD
CCHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHCCCCCCCEEHHCCCCHHHHHHHHCC
GQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIPGALFSVQPATTRVVPKLFAR
HHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHEEEECCCCCEECCCHHHHHHHHHHCC
NERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKRAKKLERFDYSERFPDKIISQGS
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCHHHHHCCC
EMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLGKPMAIIT
CCCEEEECCEEEEEEECCCEEEECHHHHCCCCEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA