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The map label for this gene is ygaF [H]

Identifier: 148361150

GI number: 148361150

Start: 3382491

End: 3382955

Strand: Direct

Name: ygaF [H]

Synonym: LPC_3124

Alternate gene names: 148361150

Gene position: 3382491-3382955 (Clockwise)

Preceding gene: 148361149

Following gene: 148361151

Centisome position: 94.58

GC content: 37.63

Gene sequence:

>465_bases
ATGAAAATAGGTGAGATGGTCCCCGATTTTGTTTTTAACGCCACGAATAACGTGCAAGGACATCTTAATGATTACAAAGG
GCAGATCATCGTACTTTATTTTTACCCTAAAGATGCCACCCCGGGCTGTACAACTGAAGGTCAAGACTTCAGAGATGCCT
ACTCGCAATTTAAAGATTTAAATACGGTGATTTTTGGTATTTCGAGAGATAGTTTAAAATCTCATGAACAATTCAAAAGC
AAACAGAATTTTCCTTTTGAATTAATCAGTGATAGCAATGAAACATTATGCCAAATGTTTGATGTGATCAAGATGAAATC
CATGTATGGCAAACAGGTCAGAGGAATAGAACGAAGTACTTTCATTATAAATGCGCAAGGTGTCTTGACACACGAATGGC
GTAAAGTGAATGTAAAAGGGCACGTTGAGGAAGTTCTAGACACGGTACGATCTTTGGCAGTATAA

Upstream 100 bases:

>100_bases
AAGGAAAAAAAGAGCATGACAAAAGAGACACGATCAAAGACAGAGAATGGCAAAGGGATCGTTCAAGAATAATGAAAAAG
AACACTTGAGGAGATGGTTT

Downstream 100 bases:

>100_bases
ATAAGAATAATCCCTGATTAAGGATTGATGCTTTAAAAAAATACTTTTTATAGAATATTTAATTAATTTTTGCTATTATT
GCTGCGGATAAATACATCAA

Product: AhpC/TSA family transporter peroxiredoxin

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKIGEMVPDFVFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCTTEGQDFRDAYSQFKDLNTVIFGISRDSLKSHEQFKS
KQNFPFELISDSNETLCQMFDVIKMKSMYGKQVRGIERSTFIINAQGVLTHEWRKVNVKGHVEEVLDTVRSLAV

Sequences:

>Translated_154_residues
MKIGEMVPDFVFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCTTEGQDFRDAYSQFKDLNTVIFGISRDSLKSHEQFKS
KQNFPFELISDSNETLCQMFDVIKMKSMYGKQVRGIERSTFIINAQGVLTHEWRKVNVKGHVEEVLDTVRSLAV
>Mature_154_residues
MKIGEMVPDFVFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCTTEGQDFRDAYSQFKDLNTVIFGISRDSLKSHEQFKS
KQNFPFELISDSNETLCQMFDVIKMKSMYGKQVRGIERSTFIINAQGVLTHEWRKVNVKGHVEEVLDTVRSLAV

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6322180, Length=93, Percent_Identity=36.5591397849462, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17738015, Length=165, Percent_Identity=31.5151515151515, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17651; Mature: 17651

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGEMVPDFVFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCTTEGQDFRDAYSQFKDL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
NTVIFGISRDSLKSHEQFKSKQNFPFELISDSNETLCQMFDVIKMKSMYGKQVRGIERST
HHEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
FIINAQGVLTHEWRKVNVKGHVEEVLDTVRSLAV
EEEECCCEEEECEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKIGEMVPDFVFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCTTEGQDFRDAYSQFKDL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
NTVIFGISRDSLKSHEQFKSKQNFPFELISDSNETLCQMFDVIKMKSMYGKQVRGIERST
HHEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
FIINAQGVLTHEWRKVNVKGHVEEVLDTVRSLAV
EEEECCCEEEECEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]