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The map label for this gene is cspA [H]

Identifier: 148361138

GI number: 148361138

Start: 3367201

End: 3367407

Strand: Direct

Name: cspA [H]

Synonym: LPC_3112

Alternate gene names: 148361138

Gene position: 3367201-3367407 (Clockwise)

Preceding gene: 148361137

Following gene: 148361140

Centisome position: 94.15

GC content: 40.1

Gene sequence:

>207_bases
ATGTCAGAAAAAATTCGTGGTACAGTCAAGTGGTTTAATGAGTCCAAAGGTTTCGGTTTTTTAGAAAGTGGCGGCAAAGA
TTATTTTGTGCATTTTAGTGCGATCCAAGGCAGTGGTTTTAAAACCCTGGCTGAAGGCGCTACTGTAATGTTTAAAGCTT
GCAATGGTCAAAAAGGACCTCAAGCTGAGGAAGTTGAAGTAGTCTAA

Upstream 100 bases:

>100_bases
AATATAAAATAATTCAAAAAATTAAAAAAAAATTAATAAAAAAACAGCACAATTAATAAAATAATGCTACAATGTATGCG
TAACAATTTAGGAAATTAAC

Downstream 100 bases:

>100_bases
TTTTTTTATATTAGCCCTGTTTTTTTAAGTATAATTTAATCCTTAGAAAAGCAGGGCTTTTTTTTATCTGAAACATTCTT
AAAATTTCTGTTCTGCATTT

Product: cold shock protein CspE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKGPQAEEVEVV

Sequences:

>Translated_68_residues
MSEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKGPQAEEVEVV
>Mature_67_residues
SEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKGPQAEEVEVV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=68.75, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=65.6716417910448, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=58.2089552238806, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=53.6231884057971, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=56.7164179104478, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=50, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7394; Mature: 7263

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKGP
CCCCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCCC
QAEEVEVV
CCCEEEEC
>Mature Secondary Structure 
SEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKGP
CCCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCCC
QAEEVEVV
CCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]