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The map label for this gene is ycjD [H]

Identifier: 148360700

GI number: 148360700

Start: 801075

End: 801293

Strand: Direct

Name: ycjD [H]

Synonym: LPC_2647

Alternate gene names: 148360700

Gene position: 801075-801293 (Clockwise)

Preceding gene: 148360701

Following gene: 148360699

Centisome position: 22.4

GC content: 32.42

Gene sequence:

>219_bases
GTGGTTCCAGCTGATGCTAAATTATTGAAACAAGCAAAATCTCTCCGTAAAAGAAGCACTGATGCTGAAAATTGTTTATG
GTACTATCTAAGAGCACATCGATTAAAAGGATACAAATTTAAAAGACAAGTTCCTATTGGAAATTATATTGTTAATTTTG
TTTGTATTCAGAGAAAACTCATCGTTGAATTGGATGGTGGGCAGCATCTTTCTAAATAA

Upstream 100 bases:

>100_bases
TTGGCGCTGATATTTAAACAAAAACTCCCTCTCCCGCGAAAGAAATTGTATAAAAAATTTGGGTATGATTCGCGGGAGAG
GGGTGGGGAGAGGGGAATAA

Downstream 100 bases:

>100_bases
AGAGTATGATAAAGACCGGAGCGCCTATTTTAGCACATTAAGTTATAAGGTTTTGAGGTTTTGGAATGATGACGTGTTAT
TGAGAACTGGAGACGTACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQVPIGNYIVNFVCIQRKLIVELDGGQHLSK

Sequences:

>Translated_72_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQVPIGNYIVNFVCIQRKLIVELDGGQHLSK
>Mature_72_residues
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQVPIGNYIVNFVCIQRKLIVELDGGQHLSK

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=63, Percent_Identity=47.6190476190476, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 8419; Mature: 8419

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQVPIGNYIVNFVCIQRKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHEE
IVELDGGQHLSK
EEEECCCCCCCC
>Mature Secondary Structure
MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQVPIGNYIVNFVCIQRKL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHEE
IVELDGGQHLSK
EEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]