Click here to switch to the map view.

The map label for this gene is ybhR [H]

Identifier: 148360685

GI number: 148360685

Start: 821383

End: 822507

Strand: Direct

Name: ybhR [H]

Synonym: LPC_2631

Alternate gene names: 148360685

Gene position: 821383-822507 (Clockwise)

Preceding gene: 148360686

Following gene: 148360684

Centisome position: 22.97

GC content: 36.71

Gene sequence:

>1125_bases
ATGGCAAAATTATCTCCAGCAACAAGAATTTTTGCTCTTGTCATTAAAGAAATATTGACTTTATTCAAAGATCCCAAGGG
ACGAATTGTATTGATAGCTCCTCCACTCCTACAGTTATTGATTTTTTCCTTTGCAGCTACTATGGAAATTAAAAATATTT
CTATAGGCATTTTGAACCAGGATTCCGGAAAGCATGGTTATGAAGTGATTCAACGCTTTATAGGCTCACCAACTTTTTCA
AAAGTTTTTTTTATTCAAAAGCAATCTGATATCAAACCTATCATTGATAACCAGGAAGCAATGGTTGTAATGACCATCCC
ACAAGATTTTTCTCGTAAAATCGAATCGAATTCACAAGCCAATATTCAGTTAATTTTGGATGGTCGACGTTCTAATGCAA
CTCAAATTGTAAATGGTTATATCAGTAGTATTATTGAAAACTATAATCAGGAAATTCAAAAAACGCATGGTGCAATCATG
ATGCCTCCCGTGATGGTCACTCGAAGTTGGTTTAACGAAAATTTGCTTTATCTTTGGTTTACCGTCCCTTCATTGATTTG
CATCTTATCCATGCTGATTTCTCTTGTGGTTACTGCTTTATCGGTAGCCAGAGAAAGAGAGCTGGGAACCTTTGATCAAT
TATTAGTATCACCTCTTACTCCCTATGAAATTCTTATAGGCAAGACTATTCCCGCCATTATCATTGGTTTGGCGGAAGGT
CTCTTGATGTGGGTTGCTGCGGTTTGGCTATTTGATGTTCCTTTTTATGGTTCTCCGTTACTGATGGTTTATATTTTGTT
TATTTTTATTATGTCAACGGTAGGTGTTGGCTTATTTATTTCTTCTATGTGTAAAACCCAGCAGCAAGCTATTTTGGGTG
TATTTATCTACATGGTGCCTGTTGTGACGCTTTCCGGTTACGCTTCTCCGGTTGAAAACATGCCGGAATGGCTCCAGGAT
TTAACGTGGTTTAACCCATTAAAATTTACTTTAATAGCAGTAATTGGCATTTTTTTAAAAGGTATGTCGGCTTTAGAGGT
TTTTATCACAACATGGCCACTTCTATTGGTAGGGGCTGTTACATTATTTATTGCTGGCTGGTTTTTTAAGCAGCGTATGG
AGTAA

Upstream 100 bases:

>100_bases
ACATTTGGTCTCTTTTGATTCGTTGCCTTTTTGCGATTGCACTGATTGGATTTGCATTCTTTTTTATTACCGCGCATAAA
ACCAGAAAAAGGCTTGATTA

Downstream 100 bases:

>100_bases
GAAACAGTATGGACAGAAAATTAGTGCTACTCTTCAGTATTTCTTGTTTATTTGGCTGTACTGTCGGTCCTGATTATCAA
CGCCCGGACATTAAAATTCA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MAKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSFAATMEIKNISIGILNQDSGKHGYEVIQRFIGSPTFS
KVFFIQKQSDIKPIIDNQEAMVVMTIPQDFSRKIESNSQANIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIM
MPPVMVTRSWFNENLLYLWFTVPSLICILSMLISLVVTALSVARERELGTFDQLLVSPLTPYEILIGKTIPAIIIGLAEG
LLMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGVGLFISSMCKTQQQAILGVFIYMVPVVTLSGYASPVENMPEWLQD
LTWFNPLKFTLIAVIGIFLKGMSALEVFITTWPLLLVGAVTLFIAGWFFKQRME

Sequences:

>Translated_374_residues
MAKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSFAATMEIKNISIGILNQDSGKHGYEVIQRFIGSPTFS
KVFFIQKQSDIKPIIDNQEAMVVMTIPQDFSRKIESNSQANIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIM
MPPVMVTRSWFNENLLYLWFTVPSLICILSMLISLVVTALSVARERELGTFDQLLVSPLTPYEILIGKTIPAIIIGLAEG
LLMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGVGLFISSMCKTQQQAILGVFIYMVPVVTLSGYASPVENMPEWLQD
LTWFNPLKFTLIAVIGIFLKGMSALEVFITTWPLLLVGAVTLFIAGWFFKQRME
>Mature_373_residues
AKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSFAATMEIKNISIGILNQDSGKHGYEVIQRFIGSPTFSK
VFFIQKQSDIKPIIDNQEAMVVMTIPQDFSRKIESNSQANIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIMM
PPVMVTRSWFNENLLYLWFTVPSLICILSMLISLVVTALSVARERELGTFDQLLVSPLTPYEILIGKTIPAIIIGLAEGL
LMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGVGLFISSMCKTQQQAILGVFIYMVPVVTLSGYASPVENMPEWLQDL
TWFNPLKFTLIAVIGIFLKGMSALEVFITTWPLLLVGAVTLFIAGWFFKQRME

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=365, Percent_Identity=43.8356164383562, Blast_Score=332, Evalue=2e-92,
Organism=Escherichia coli, GI1787011, Length=337, Percent_Identity=29.673590504451, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI48994943, Length=356, Percent_Identity=26.685393258427, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI226510979, Length=379, Percent_Identity=27.1767810026385, Blast_Score=103, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24650855, Length=386, Percent_Identity=19.9481865284974, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650853, Length=386, Percent_Identity=19.9481865284974, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42004; Mature: 41873

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSFAATMEIKNISIGILNQ
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHEECEEEEEEEEC
DSGKHGYEVIQRFIGSPTFSKVFFIQKQSDIKPIIDNQEAMVVMTIPQDFSRKIESNSQA
CCCCHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCCC
NIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIMMPPVMVTRSWFNENLLYLWF
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCEEEHH
TVPSLICILSMLISLVVTALSVARERELGTFDQLLVSPLTPYEILIGKTIPAIIIGLAEG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH
LLMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGVGLFISSMCKTQQQAILGVFIYMVP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVTLSGYASPVENMPEWLQDLTWFNPLKFTLIAVIGIFLKGMSALEVFITTWPLLLVGAV
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
TLFIAGWFFKQRME
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSFAATMEIKNISIGILNQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHEECEEEEEEEEC
DSGKHGYEVIQRFIGSPTFSKVFFIQKQSDIKPIIDNQEAMVVMTIPQDFSRKIESNSQA
CCCCHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCCC
NIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIMMPPVMVTRSWFNENLLYLWF
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCEEEHH
TVPSLICILSMLISLVVTALSVARERELGTFDQLLVSPLTPYEILIGKTIPAIIIGLAEG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH
LLMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGVGLFISSMCKTQQQAILGVFIYMVP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVTLSGYASPVENMPEWLQDLTWFNPLKFTLIAVIGIFLKGMSALEVFITTWPLLLVGAV
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
TLFIAGWFFKQRME
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]