Click here to switch to the map view.

The map label for this gene is ybgI [C]

Identifier: 148360506

GI number: 148360506

Start: 1029476

End: 1030234

Strand: Direct

Name: ybgI [C]

Synonym: LPC_2447

Alternate gene names: 148360506

Gene position: 1029476-1030234 (Clockwise)

Preceding gene: 148360507

Following gene: 148360502

Centisome position: 28.78

GC content: 40.45

Gene sequence:

>759_bases
GTGATTACAAGAGATGAATTAAGCCTTTTTTTACTGGATTTCTTGAATTGCTCTCAATACCAGGATTATGCGCCTAATGG
AATTCAAGTTGAAGGCAAAGACAAGATTAAGCGTATATGTACGGCAGTCAGTGCATCAGAGGACGTGATTTCTCAAGCTA
TTGAACAGCAAGCTGATGCACTGTTAGTTCACCATGGTTATTTCTGGAAAGGTGAAAATCCTGTTATTTCCGGAATAAAA
AGGCGAAGGATTGCTAAGCTACTTGGCCATAACATGAATTTATTTGCCTATCATTTGCCTTTGGATTGTCATCCCGAGCT
AGGGAATAATGCCAGCCTGGCGAATTTGCTGTTAATAGAGTCCCATGAGATGCATAAGGTCAACAATACTGCCAATCTCC
TTTGGTCTGGAAAATTATCAAAGGCAATGAACAGCGAACAGTTTTCCAGTTTTTTAGAGCACAAACTTGGCCGGTATCCT
GTACATATTGCGGGAAATGAAAAAATGATTCACTCCATAGCATGGTGCACTGGAGCAGCACAGGACTTTATAGAAGAAGC
CTACCAACTTGGCGTTGATGCTTATTTAAGCGGTGAAGTTTCTGAACGAACGTTCTATCAGGCTATGGAATTGGGTATAC
AATATTTTTCTTGTGGTCATCATGCGACGGAGCGTTTCGGCATTCAATCCCTCGGTGTTTATCTTGCAAACTATTTTGAC
TTGGAACATTGGTTTATAGATAGTCCTAATCCGATTTAA

Upstream 100 bases:

>100_bases
AAACAGTAGTCGAGCGGATTTATCATGTTGATAGAGGTTATGAGCGAATAGAAGAAAAGTTATCTCTATTGGGAGCGGAC
ATTAAGAGAGTTTCTGACAG

Downstream 100 bases:

>100_bases
AAAGAACAGGACCTACGCAAAATCCCAATCGCTTTGTTAAAAAATATTTTTAATTCGTTTATTTAGTTTATTATTTAAAC
TCCCCCATTAAAAACATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVSASEDVISQAIEQQADALLVHHGYFWKGENPVISGIK
RRRIAKLLGHNMNLFAYHLPLDCHPELGNNASLANLLLIESHEMHKVNNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYP
VHIAGNEKMIHSIAWCTGAAQDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSCGHHATERFGIQSLGVYLANYFD
LEHWFIDSPNPI

Sequences:

>Translated_252_residues
MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVSASEDVISQAIEQQADALLVHHGYFWKGENPVISGIK
RRRIAKLLGHNMNLFAYHLPLDCHPELGNNASLANLLLIESHEMHKVNNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYP
VHIAGNEKMIHSIAWCTGAAQDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSCGHHATERFGIQSLGVYLANYFD
LEHWFIDSPNPI
>Mature_252_residues
MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVSASEDVISQAIEQQADALLVHHGYFWKGENPVISGIK
RRRIAKLLGHNMNLFAYHLPLDCHPELGNNASLANLLLIESHEMHKVNNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYP
VHIAGNEKMIHSIAWCTGAAQDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSCGHHATERFGIQSLGVYLANYFD
LEHWFIDSPNPI

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=247, Percent_Identity=45.748987854251, Blast_Score=237, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 28509; Mature: 28509

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVSASEDVISQAIEQQADA
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHE
LLVHHGYFWKGENPVISGIKRRRIAKLLGHNMNLFAYHLPLDCHPELGNNASLANLLLIE
EEEECCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHEEEEEC
SHEMHKVNNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYPVHIAGNEKMIHSIAWCTGAA
CCCHHHCCCCHHEEECCHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHH
QDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSCGHHATERFGIQSLGVYLANYFD
HHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LEHWFIDSPNPI
HHHEECCCCCCC
>Mature Secondary Structure
MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVSASEDVISQAIEQQADA
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHE
LLVHHGYFWKGENPVISGIKRRRIAKLLGHNMNLFAYHLPLDCHPELGNNASLANLLLIE
EEEECCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHEEEEEC
SHEMHKVNNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYPVHIAGNEKMIHSIAWCTGAA
CCCHHHCCCCHHEEECCHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHH
QDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSCGHHATERFGIQSLGVYLANYFD
HHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LEHWFIDSPNPI
HHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]