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The map label for this gene is ybbD [H]

Identifier: 148360469

GI number: 148360469

Start: 1063450

End: 1064526

Strand: Direct

Name: ybbD [H]

Synonym: LPC_2408

Alternate gene names: 148360469

Gene position: 1063450-1064526 (Clockwise)

Preceding gene: 148360470

Following gene: 148360468

Centisome position: 29.73

GC content: 40.3

Gene sequence:

>1077_bases
TTGATTACAATAAGAAACAAAATCGGACAAATGCTGATTATGGGATTTCATGGTTCCGAGCTGCATGATAATAGTCCGGT
TGCTCAATGGTTATCTAATGATGGTCTCGGCGGAGTGTTGTTATTCGACAAAGATCTATCCACAGGGATTTATGGCAAGA
ATTTAAGGAATCAGGCTCAGATAAGGCAATTGATTCGACAGCTTAATCGTTATGCATCAATGATTTCAGGAGGTAATGAC
AATCTGCCTTTATTTACTGCGATTGATTACGAAGGTGGAGTGGTTGACAGGCTAAGCAAAATAGAAGGCTGTCCGCCTAC
TATGAAAGCCAGGGAACTTGCAAAGTTATCCAGTGATGATTTTGATGAAGAAGTAACTCAAATGGCTATGACGTTGCAGT
CATTAGGTTTTAATTTAAATTTTGCCCCGGTTGTTGATTTAAATTTAAATGCTCATGCAGGGATTATTGGAAACCTGGGA
AGAAGCTTTTCTTCTAACCCAGAGGTGACTATTCGTTTGGCCAAGCAGTTCGTTGATGTTTTCAGTCGTCATGGTATTGC
TTGTGCGTATAAACATTTCCCCGGCCATGGCAGCGCCACTGGAGATACACATGAGGGATTTGTCGATGTTACAGAAACCT
TTCAAACCGATGAGCTAATTCCTTATCGAAGTTTATTAAAAGACCTGTCTAACCCTGTCATGGTAATGACGGCACATGTG
ATCAATAAGCATTTGGATAGTAAGGGATTGCCAGCAACTCTGTCCTACGACGTTTTAACGTTATTGTTACGTCAAAGCAT
AGGATATGACGGGGTCATTATCAGCGATGATTTGCAAATGCATGCCATTTCAAATCACTATTCATTAGAAGAGGCTCTTT
GTCTTACCATCAATGCCGGGGCTGATATGGTCATATTTGCCAATCAGCTTGGAACTATTACCGCACCGGAAGTTATAGAT
GTGATTGAAAAACTGGTAATTGACAAGCAAATTCCCTCTCAACGTATTGATGAGGCGTACAGAAGAATAGTACGTCTGAA
GCAACAAATTATATGCAGTGCATTAATCAATACGTAA

Upstream 100 bases:

>100_bases
ATCCCAAGCTTTAATTTTAAAAGCTAATGCGTAGCGGGGCATAGCCAGAGAGAATATCTTTGTGTATGATTTTATGCTTA
TTTTGTGATGGAGCGAGTGA

Downstream 100 bases:

>100_bases
TGCCCATGCCAAGTGGTAACTGGCGGATTTATGAAACATCAAGTTACCACTATAATTCCGCCTATTTGAGAGGCGCCATC
TTCTTTTTCAGCATGAACAG

Product: glycosyl hydrolase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIRQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRHGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPVMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEEALCLTINAGADMVIFANQLGTITAPEVID
VIEKLVIDKQIPSQRIDEAYRRIVRLKQQIICSALINT

Sequences:

>Translated_358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIRQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRHGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPVMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEEALCLTINAGADMVIFANQLGTITAPEVID
VIEKLVIDKQIPSQRIDEAYRRIVRLKQQIICSALINT
>Mature_358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIRQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRHGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPVMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEEALCLTINAGADMVIFANQLGTITAPEVID
VIEKLVIDKQIPSQRIDEAYRRIVRLKQQIICSALINT

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=332, Percent_Identity=29.8192771084337, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 39470; Mature: 39470

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQ
CEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH
IRQLIRQLNRYASMISGGNDNLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDD
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCC
FDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLGRSFSSNPEVTIRLAKQFVDV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHH
FSRHGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPVMVMTAHV
HHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCEEEHHHHH
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEEALCLTINAG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEEEEEECC
ADMVIFANQLGTITAPEVIDVIEKLVIDKQIPSQRIDEAYRRIVRLKQQIICSALINT
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQ
CEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH
IRQLIRQLNRYASMISGGNDNLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDD
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCC
FDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLGRSFSSNPEVTIRLAKQFVDV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHH
FSRHGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPVMVMTAHV
HHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCEEEHHHHH
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEEALCLTINAG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEEEEEECC
ADMVIFANQLGTITAPEVIDVIEKLVIDKQIPSQRIDEAYRRIVRLKQQIICSALINT
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]