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The map label for this gene is radC [C]

Identifier: 148360058

GI number: 148360058

Start: 2979870

End: 2980553

Strand: Direct

Name: radC [C]

Synonym: LPC_1989

Alternate gene names: 148360058

Gene position: 2979870-2980553 (Clockwise)

Preceding gene: 148360062

Following gene: 148360057

Centisome position: 83.32

GC content: 40.35

Gene sequence:

>684_bases
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAACTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCAGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAGCCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
TGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGACGCCAGGTTACTGGATCACATTGTCATTGGAGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAA

Upstream 100 bases:

>100_bases
TTTTTTATTAATAAAATCTTGCATGGCTCGCCATTTTTGATAAGAATAACCCCGATCAAAGCACAAACTTCGCAATAAAG
GAATATAAAAGGAATACAAA

Downstream 100 bases:

>100_bases
TTCTCGTCCTTATCATTTGAGTTAATGGATTAAAAATGCTCCAACCTTTTATTACAGATTTTATAAAAAATCGTTCCTTT
CAATTTATTTTTGTAATGGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDYKNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Sequences:

>Translated_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDYKNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
>Mature_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDYKNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=219, Percent_Identity=42.4657534246575, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=45.0819672131148, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=44.2622950819672, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=43.2, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1989_LEGPC (A5IEW9)

Other databases:

- EMBL:   CP000675
- RefSeq:   YP_001251265.1
- ProteinModelPortal:   A5IEW9
- SMR:   A5IEW9
- STRING:   A5IEW9
- GeneID:   5181795
- GenomeReviews:   CP000675_GR
- KEGG:   lpc:LPC_1989
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   CLSK833435
- BioCyc:   LPNE400673:LPC_1989-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25707; Mature: 25707

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC
>Mature Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA