Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 148360022

GI number: 148360022

Start: 3023297

End: 3023767

Strand: Direct

Name: bkdR [H]

Synonym: LPC_1953

Alternate gene names: 148360022

Gene position: 3023297-3023767 (Clockwise)

Preceding gene: 148360028

Following gene: 148360021

Centisome position: 84.53

GC content: 38.0

Gene sequence:

>471_bases
ATGCTCGATCGTACCGATAAAAAAATACTTGAAATACTGCAAGCAAATTGCGAAATCAATAACCAGGAATTGGCCGACCT
TGTGGCCTTGTCTCCTTCCTCCTGTTTGCGCCGAGTCAAATTATTAATAGATAATGGTTATATCAAGAAACAGGTTGCCC
TGCTTGAGCCAGAAAAAATAGGGTTAAAATTGACCGTTATTGTTTTAGTAGGGTTAAACAATCACCAGCCTGAGGTTATG
AATCAATTTGAAAAAACCATACACCTTTTCCCAGAAGTCATTCAATGTTACCTGATTACAGGCCAATCTGCTGATTATTT
ATTGAAGATAATTGTGCCCGATTTAAACGCTTATCAAACTTTTTTATTAGGAAAATTAACCCGCATCAATGGCGTTGCAA
GCGTTCATTCCAGCTTTATATTACGTAATGTTTCTGACACAACAGCCCTACCCCTTGATCACTTGGATTAG

Upstream 100 bases:

>100_bases
AAACCATCTATTTTGATTAAAAATTCTAATTTAATAGATTTTTTTGGAATATAATTCTATATTAAGAAATATCAATGCCA
TTTTCATTGCATAAGATATG

Downstream 100 bases:

>100_bases
GGCGCTGCCCCCCCAAATATTAATTATGCAATAAATACTAACTCGAAAATGAGTGCTTCTTCTCTATAAAATCAAAAATC
CTATGAAAAATAGATAAAAA

Product: AsnC family transporter transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKIGLKLTVIVLVGLNNHQPEVM
NQFEKTIHLFPEVIQCYLITGQSADYLLKIIVPDLNAYQTFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD

Sequences:

>Translated_156_residues
MLDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKIGLKLTVIVLVGLNNHQPEVM
NQFEKTIHLFPEVIQCYLITGQSADYLLKIIVPDLNAYQTFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
>Mature_156_residues
MLDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKIGLKLTVIVLVGLNNHQPEVM
NQFEKTIHLFPEVIQCYLITGQSADYLLKIIVPDLNAYQTFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=153, Percent_Identity=37.2549019607843, Blast_Score=112, Evalue=8e-27,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=38.255033557047, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17506; Mature: 17506

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKI
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECHHHC
GLKLTVIVLVGLNNHQPEVMNQFEKTIHLFPEVIQCYLITGQSADYLLKIIVPDLNAYQT
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEHCCCCCCCEEEEEEECCCHHHHH
FLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKI
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECHHHC
GLKLTVIVLVGLNNHQPEVMNQFEKTIHLFPEVIQCYLITGQSADYLLKIIVPDLNAYQT
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEHCCCCCCCEEEEEEECCCHHHHH
FLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]