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The map label for this gene is 148359966

Identifier: 148359966

GI number: 148359966

Start: 3075325

End: 3076248

Strand: Reverse

Name: 148359966

Synonym: LPC_1895

Alternate gene names: NA

Gene position: 3076248-3075325 (Counterclockwise)

Preceding gene: 148359965

Following gene: 148359973

Centisome position: 86.01

GC content: 32.9

Gene sequence:

>924_bases
ATGAAACAAAAAAAGAATAAAATAATAACTAAAAATAAGTGTTATCCTATTAAGGATTCAGTATTTTATAAACTTTCGAG
TAAAGGGCGTTTAGCAAATCTTTTATCATCTACTGTGCAGGAATTGAAGTCATTAACTAAAAACGATCAATATCATTGTT
TTACTCAATTGAAACGAGGAAAAACAAGACTAATTCAAGAACCGCTACCAAAATTAGATAAAATTCATTCGCGAATAGCT
AGTTTGTTATGCAGAATCGAAACTGTTGATGGATTGCATTCTGGCTGTAAAGGCAGATCAAATATTTCAAATGCAAAAGC
TCATGTGGGAGTAGGTAAAAAAGTTATTACTTTAGATATAAAGAGTTTTTTTCCATCCACAAAGCGTTCTAGCGTTTTTT
ATTTTTTTAATAATACGATGAGTTGCTCCCCTGATATTGCTGATTTATTGTCACAGTTATGCACTTATGAAGGTTATATT
CCAACAGGTAGTCGATTAAGTATGCAACTAGCCTATTTTTCCAACAAAAGAATGTTTGATGAGATGGAACAAGCCGCTAG
TGAGTGTGGCGCAATAATGACAATATATGTCGATGATTTAACTTTTTCTGGGGCGGAACTATCAAGAAACTTCATAAAAA
GATTAGAGTTTATTGCCAAAAAATATGGCCACAAAATACAATCGTCGAAAACCAGGTTTTATTCGGAAAATGAGGTGAAG
TTAATAACTGGAGTAGCTGTAATAGGTGAACAACTGAAACCTAGAAATAAACACTTAGCTGCGTTGACTCAAGAAATAGA
ATATTGGCGAGTCAACAAGAGTCAGCAATCTGCAAATCGTATTTTAGGTTATATGACTTATTTAGGTAGTATTGATTCTC
GATATAAAGATAAAGCCAAAACGTTCAGGCATCAGATGGCTTAA

Upstream 100 bases:

>100_bases
TTTTCAGAACACCTTGATGAGACAAATACGGTTCCGGAAAGATTTAGAGTTGTTATAGCTGATAAGCTTCTTAAGCTCAT
GGAATGGGTAATGACACGGA

Downstream 100 bases:

>100_bases
AAGATATGAAACTAATTCATTTGGCAAATATTTATTCCATTTGGCCTATGATAATATATTTTAAACTTTTATCACTTTGT
TATGTATATTTCATGGATTA

Product: hypothetical protein

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKQKKNKIITKNKCYPIKDSVFYKLSSKGRLANLLSSTVQELKSLTKNDQYHCFTQLKRGKTRLIQEPLPKLDKIHSRIA
SLLCRIETVDGLHSGCKGRSNISNAKAHVGVGKKVITLDIKSFFPSTKRSSVFYFFNNTMSCSPDIADLLSQLCTYEGYI
PTGSRLSMQLAYFSNKRMFDEMEQAASECGAIMTIYVDDLTFSGAELSRNFIKRLEFIAKKYGHKIQSSKTRFYSENEVK
LITGVAVIGEQLKPRNKHLAALTQEIEYWRVNKSQQSANRILGYMTYLGSIDSRYKDKAKTFRHQMA

Sequences:

>Translated_307_residues
MKQKKNKIITKNKCYPIKDSVFYKLSSKGRLANLLSSTVQELKSLTKNDQYHCFTQLKRGKTRLIQEPLPKLDKIHSRIA
SLLCRIETVDGLHSGCKGRSNISNAKAHVGVGKKVITLDIKSFFPSTKRSSVFYFFNNTMSCSPDIADLLSQLCTYEGYI
PTGSRLSMQLAYFSNKRMFDEMEQAASECGAIMTIYVDDLTFSGAELSRNFIKRLEFIAKKYGHKIQSSKTRFYSENEVK
LITGVAVIGEQLKPRNKHLAALTQEIEYWRVNKSQQSANRILGYMTYLGSIDSRYKDKAKTFRHQMA
>Mature_307_residues
MKQKKNKIITKNKCYPIKDSVFYKLSSKGRLANLLSSTVQELKSLTKNDQYHCFTQLKRGKTRLIQEPLPKLDKIHSRIA
SLLCRIETVDGLHSGCKGRSNISNAKAHVGVGKKVITLDIKSFFPSTKRSSVFYFFNNTMSCSPDIADLLSQLCTYEGYI
PTGSRLSMQLAYFSNKRMFDEMEQAASECGAIMTIYVDDLTFSGAELSRNFIKRLEFIAKKYGHKIQSSKTRFYSENEVK
LITGVAVIGEQLKPRNKHLAALTQEIEYWRVNKSQQSANRILGYMTYLGSIDSRYKDKAKTFRHQMA

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 35042; Mature: 35042

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKKNKIITKNKCYPIKDSVFYKLSSKGRLANLLSSTVQELKSLTKNDQYHCFTQLKRG
CCCCCCCCEECCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KTRLIQEPLPKLDKIHSRIASLLCRIETVDGLHSGCKGRSNISNAKAHVGVGKKVITLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEH
KSFFPSTKRSSVFYFFNNTMSCSPDIADLLSQLCTYEGYIPTGSRLSMQLAYFSNKRMFD
HHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCCHHHH
EMEQAASECGAIMTIYVDDLTFSGAELSRNFIKRLEFIAKKYGHKIQSSKTRFYSENEVK
HHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCEE
LITGVAVIGEQLKPRNKHLAALTQEIEYWRVNKSQQSANRILGYMTYLGSIDSRYKDKAK
EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFRHQMA
HHHHHCC
>Mature Secondary Structure
MKQKKNKIITKNKCYPIKDSVFYKLSSKGRLANLLSSTVQELKSLTKNDQYHCFTQLKRG
CCCCCCCCEECCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KTRLIQEPLPKLDKIHSRIASLLCRIETVDGLHSGCKGRSNISNAKAHVGVGKKVITLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEH
KSFFPSTKRSSVFYFFNNTMSCSPDIADLLSQLCTYEGYIPTGSRLSMQLAYFSNKRMFD
HHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCCHHHH
EMEQAASECGAIMTIYVDDLTFSGAELSRNFIKRLEFIAKKYGHKIQSSKTRFYSENEVK
HHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCEE
LITGVAVIGEQLKPRNKHLAALTQEIEYWRVNKSQQSANRILGYMTYLGSIDSRYKDKAK
EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFRHQMA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]