Click here to switch to the map view.

The map label for this gene is 148359965

Identifier: 148359965

GI number: 148359965

Start: 3076229

End: 3076471

Strand: Reverse

Name: 148359965

Synonym: LPC_1894

Alternate gene names: NA

Gene position: 3076471-3076229 (Counterclockwise)

Preceding gene: 148359964

Following gene: 148359966

Centisome position: 86.02

GC content: 31.28

Gene sequence:

>243_bases
ATGAAGTTAGATTTGTCTAAATCTTATCTTAGTGAGATTGAATCAGGAAAAAAAAATATTAGTTTCGAGCTTCTGGAAAA
GTATTCAAAAATTTTTGATATTCCAGTTTCGTCGTTAGTCTTTTTTTCAGAACACCTTGATGAGACAAATACGGTTCCGG
AAAGATTTAGAGTTGTTATAGCTGATAAGCTTCTTAAGCTCATGGAATGGGTAATGACACGGAATGAAACAAAAAAAGAA
TAA

Upstream 100 bases:

>100_bases
CGGCTCTTAAGCGATCCCTTCTTTTGCGGAGATATTAATAATTAATCGGGCGCTAAAAATAATTCGTCAGTTTCACAGAC
TTACTCAGATAGATCTGGCC

Downstream 100 bases:

>100_bases
AATAATAACTAAAAATAAGTGTTATCCTATTAAGGATTCAGTATTTTATAAACTTTCGAGTAAAGGGCGTTTAGCAAATC
TTTTATCATCTACTGTGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Hypotethical Transcriptional Regulator; Helix-Turn-Helix Domain Protein

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MKLDLSKSYLSEIESGKKNISFELLEKYSKIFDIPVSSLVFFSEHLDETNTVPERFRVVIADKLLKLMEWVMTRNETKKE

Sequences:

>Translated_80_residues
MKLDLSKSYLSEIESGKKNISFELLEKYSKIFDIPVSSLVFFSEHLDETNTVPERFRVVIADKLLKLMEWVMTRNETKKE
>Mature_80_residues
MKLDLSKSYLSEIESGKKNISFELLEKYSKIFDIPVSSLVFFSEHLDETNTVPERFRVVIADKLLKLMEWVMTRNETKKE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9444; Mature: 9444

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDLSKSYLSEIESGKKNISFELLEKYSKIFDIPVSSLVFFSEHLDETNTVPERFRVVI
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
ADKLLKLMEWVMTRNETKKE
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLDLSKSYLSEIESGKKNISFELLEKYSKIFDIPVSSLVFFSEHLDETNTVPERFRVVI
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
ADKLLKLMEWVMTRNETKKE
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA