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The map label for this gene is cspG [H]

Identifier: 148359631

GI number: 148359631

Start: 2416412

End: 2416621

Strand: Direct

Name: cspG [H]

Synonym: LPC_1546

Alternate gene names: 148359631

Gene position: 2416412-2416621 (Clockwise)

Preceding gene: 148359629

Following gene: 148359632

Centisome position: 67.56

GC content: 38.57

Gene sequence:

>210_bases
ATGTCTAAAACAGTAAATGGAGTCGTTAAATGGTTTAACGAGATCAAAGGATTTGGTTTTATTGAGCAAGAAGGCGGCCC
GGATGTATTTGCTCACTTTAAAGAAATTTCAAGTTCTGGCTTTAAAACCCTGACTGAAGGTCAGCGAGTACAATTCATTG
TGACGCAAGGAGCAAAAGGTCTTCAAGCACAAAATATAACAGCCCTTTAA

Upstream 100 bases:

>100_bases
TTTTATTCATTTAATCCCTCGTTCGGTAGTTTTTAATTCTTGACCGGTTTCCGGCTAAATTCGCCTATACAGGCATTATA
ATAAATACTTAAGGATACTT

Downstream 100 bases:

>100_bases
TTTAAGCAGCTAATATTATTTTTACTTATATCTCTTTTTAGAATGATATATCTGATAGAAACATTAAAATCACTCTCTGT
TGATGTCTTTGAGATGATTT

Product: cold shock DNA binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKGLQAQNITAL

Sequences:

>Translated_69_residues
MSKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKGLQAQNITAL
>Mature_68_residues
SKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKGLQAQNITAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=70, Percent_Identity=61.4285714285714, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=52.8571428571429, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=52.8571428571429, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=56.0606060606061, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=50.7462686567164, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7549; Mature: 7417

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG
CCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
LQAQNITAL
CCCCCCCCC
>Mature Secondary Structure 
SKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG
CCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
LQAQNITAL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]