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The map label for this gene is fni [H]

Identifier: 148359625

GI number: 148359625

Start: 2409563

End: 2410591

Strand: Direct

Name: fni [H]

Synonym: LPC_1537

Alternate gene names: 148359625

Gene position: 2409563-2410591 (Clockwise)

Preceding gene: 148359623

Following gene: 148359626

Centisome position: 67.37

GC content: 42.66

Gene sequence:

>1029_bases
ATGCAAAACGAATACAGCCAATTTGAACAGCGTAAGCGCGATCACATAGAACTGGCCTTAATGCCAGCCAATCAAAGCAG
CGAATTAAATCCCTTTGATCATTTTTCTTTGGTGCATGAAGCCTTACCTGACCTTGATTTTAAAGACATTTCCATACAAA
GCATCCGGCTTAAAAAAAAGGTTGAAAAACCATTTATTATCAGTTCAATGACAGCAGGCCATTCCAATGCTTTAGAAATT
AACTATCGATTAATGGAAGCTTGCTCAAAAACAAAATGGGCAATGGGCGTTGGCTCACAACGCAGAGAATTAACCGATAA
ACAAGCCGCATTTGAGTGGGCGCCACTCCGTCGTGATTTCCCCATGGTCAGCCTGTTCAGTAATTTGGGAATCGCTCAGT
TAATTGACACTCCAATTTCTGCAATCCAGCGCTTAATTGATACATTGCAAGCTGAAGCATTGATTGTTCATTGCAATCCA
TTACAAGAGTGTATTCAACCTGAAGGGACAACTAATTTTCAAGGGTGCTGGACAGCATTGGAAGCGTTAGTCAAAAAGAT
TGCTTCTCCAGTTATAATAAAAGAAACTGGTTGTGGTTTTTCAAAAAATACGCTGCTCCGGTTAAATAATATAGGTGTTG
CCGCTGTTGACGTCAGTGGTGTGGGGGGTACGCATTGGGGGCGAATTGAAGGACATCGGGCAAACAAGGATCCGATAAGA
CACCGAACTGCTGATACTTTTCGAAATTGGGGCATTGATACTTTACAAAGCATTCGTAACGCCATTAGTCTTAATCCCTC
TTTCGAAATTTGGGGTTCTGGCGGCGTAAGAAATGGTTTGGATGCTGCAAAGCTATTTGCGCTCGGTGCTACCACAGTCG
GCTTCGCGAAACCCATGCTTGAAGCGGCTTTGGACTCAACCGGGCAAGTACTGACCCAAATGAATACAATTGAATATGAA
TTGAAAACTGCTATGTTTTGTACTGGCAGCCGAGTTCTTGATGATTTAAAGGAGAAGGCATGTCCATAG

Upstream 100 bases:

>100_bases
CAATGATACCAAATAAATCACTGTGTCGAATAGAAATGCAATGGTCTATTTCATGATTTTATGCTAAAATTGACGCTATT
TTTCAAAAGTAAATTCAGGC

Downstream 100 bases:

>100_bases
CTGCTAATGCCGGTGAATTATTTCGCGGATTCTCAAAGTTATCACGTGAAGAGCGCTTTCAAAGGTTATGCGCTTTAGGT
GCCTTGACTCATGAAGACAT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRLKKKVEKPFIISSMTAGHSNALEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWAPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIVHCNP
LQECIQPEGTTNFQGCWTALEALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRANKDPIR
HRTADTFRNWGIDTLQSIRNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTGQVLTQMNTIEYE
LKTAMFCTGSRVLDDLKEKACP

Sequences:

>Translated_342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRLKKKVEKPFIISSMTAGHSNALEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWAPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIVHCNP
LQECIQPEGTTNFQGCWTALEALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRANKDPIR
HRTADTFRNWGIDTLQSIRNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTGQVLTQMNTIEYE
LKTAMFCTGSRVLDDLKEKACP
>Mature_342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRLKKKVEKPFIISSMTAGHSNALEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWAPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIVHCNP
LQECIQPEGTTNFQGCWTALEALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRANKDPIR
HRTADTFRNWGIDTLQSIRNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTGQVLTQMNTIEYE
LKTAMFCTGSRVLDDLKEKACP

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 37902; Mature: 37902

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRLKKK
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VEKPFIISSMTAGHSNALEINYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWAPLRRDF
CCCCEEEEEECCCCCCEEEEHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIVHCNPLQECIQPEGTTNFQGCWTAL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCCHHHHHHHH
EALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRANKDPIR
HHHHHHHCCCEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHH
HRTADTFRNWGIDTLQSIRNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPML
HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EAALDSTGQVLTQMNTIEYELKTAMFCTGSRVLDDLKEKACP
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRLKKK
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VEKPFIISSMTAGHSNALEINYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWAPLRRDF
CCCCEEEEEECCCCCCEEEEHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIVHCNPLQECIQPEGTTNFQGCWTAL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCCHHHHHHHH
EALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRANKDPIR
HHHHHHHCCCEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHH
HRTADTFRNWGIDTLQSIRNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPML
HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EAALDSTGQVLTQMNTIEYELKTAMFCTGSRVLDDLKEKACP
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA