Click here to switch to the map view.

The map label for this gene is pilF

Identifier: 148359080

GI number: 148359080

Start: 1776988

End: 1777770

Strand: Reverse

Name: pilF

Synonym: LPC_0967

Alternate gene names: NA

Gene position: 1777770-1776988 (Counterclockwise)

Preceding gene: 148359081

Following gene: 148359079

Centisome position: 49.71

GC content: 36.27

Gene sequence:

>783_bases
GTGCTAAAAAGCATAAGGTACTTATTAACTATAATAATTTGTTTATTTGTTGGAGCTTGTCAGCATACACAAGACAACGA
AGAGCCTAATACCATTAGAAAAGTAAACCTTAGCAAAGCGGCTTCTTTTAATGTGCAGTTAGGGTTGGGATATTTGAAGC
AAGGCGACAGACCTAGAGCAAAAAAGAAGCTGCTAACCGCCTTGGAACAACAACCAGATTCAGCGGATGTTAATGCAGCA
TTAGCCTATTATTTTGAACAAACCAAAGAATTGGAGCAAGCAAAAAAATTCTATCATAAAGCAATAACCCTATCGCAAAA
TGGTGGTGCACAATTGAATAATTACGGCGCTTTTCTGTGTCGACAGGGGGATTATAAAAATGCTGAAACTTACTTCCTGA
AGGCCGTTAAAGATCAAAACTATGTGCATACCTCAGGTGCTTATGAAAATGCTGGATTATGTGCTATGGCTATACCTGAT
CATGATAAAGCCATTTTATATTTTACCAAGGCCTTAAATCAGGATCCATCGAGAAAAGAATCCCTATATGAATTAGTAAA
ATTACAAAGTAAAATAGGACATGATAAAGAAGCCGTCGAACTGCTTCAAAAACATGCTGATTTAGTATTAAATGATAAGG
TAATGCTTGCATTAGCGAAAGACATAGCAAATAGAACCGGCCAACATTCTCTTGCAGCAGAATATGAAAATAGCTTCAAT
AAACTGGAGCCAACTAATAATATTAGTGGAGTAAATGATGAATACAATAGCAGCAATGGATGA

Upstream 100 bases:

>100_bases
ATTTTCACCTACAGACTCACATTAAATAGTGACAAATCATTTTTAATTTAGACTTAAGTGGTTATAATGCGAAATCATTT
CTAACGTAAAGTGATTAATC

Downstream 100 bases:

>100_bases
GACAAGAAATAATGAATTTAACAATCCCGGCTACGAGCTGGCGGCTCTTCGCCAGCAAAAGGGGTATTCAATAGAGTATG
TTGCGAGCAAACTTCATTTA

Product: fimbrial biogenesis and twitching motility protein PilF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNTIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEAVELLQKHADLVLNDKVMLALAKDIANRTGQHSLAAEYENSFN
KLEPTNNISGVNDEYNSSNG

Sequences:

>Translated_260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNTIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEAVELLQKHADLVLNDKVMLALAKDIANRTGQHSLAAEYENSFN
KLEPTNNISGVNDEYNSSNG
>Mature_260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNTIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEAVELLQKHADLVLNDKVMLALAKDIANRTGQHSLAAEYENSFN
KLEPTNNISGVNDEYNSSNG

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29085; Mature: 29085

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSIRYLLTIIICLFVGACQHTQDNEEPNTIRKVNLSKAASFNVQLGLGYLKQGDRPRA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHEEEEEECCHHHCCCCCCHH
KKKLLTALEQQPDSADVNAALAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEE
RQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPDHDKAILYFTKALNQDPSRKE
ECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHCCCCCHHH
SLYELVKLQSKIGHDKEAVELLQKHADLVLNDKVMLALAKDIANRTGQHSLAAEYENSFN
HHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
KLEPTNNISGVNDEYNSSNG
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKSIRYLLTIIICLFVGACQHTQDNEEPNTIRKVNLSKAASFNVQLGLGYLKQGDRPRA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHEEEEEECCHHHCCCCCCHH
KKKLLTALEQQPDSADVNAALAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEE
RQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPDHDKAILYFTKALNQDPSRKE
ECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHCCCCCHHH
SLYELVKLQSKIGHDKEAVELLQKHADLVLNDKVMLALAKDIANRTGQHSLAAEYENSFN
HHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
KLEPTNNISGVNDEYNSSNG
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]