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The map label for this gene is ybeY [C]

Identifier: 148358971

GI number: 148358971

Start: 1654299

End: 1654775

Strand: Reverse

Name: ybeY [C]

Synonym: LPC_0856

Alternate gene names: 148358971

Gene position: 1654775-1654299 (Counterclockwise)

Preceding gene: 148358972

Following gene: 148358970

Centisome position: 46.27

GC content: 38.57

Gene sequence:

>477_bases
ATGACCTATCACATTGATATACAAAATGCTACAGGGAAATTATTGCCCTTGAGTGAAGATGAAATCACCAAGCTGGCATC
GCTAGCTCTAAGAGATCATAAGCAGGATGCTGAGCTAACAGTTCGTCTGGTTGATGTTGAAGAAATGACTTATCTTAACC
ATACCTATAGAAAGAAGAACAAACCAACCAATGTTCTTGCATTTCCTTGCTCACTACCGGCGAACATTGAACTGGAATGT
CCTCTTTTGGGTGACGTCGTTATTTGCCCTGAAGTGTTGCTCGCAGAAAGCGCTCAATTCAATAAATCGCTACATGCACA
TTGGTCTTTAATCCTGATTCATGGAGTTTTGCATTTATTAGGGTATGATCATATAAAAGATGAAGAAGCCTCTATTATGC
AAATGCTCGAAGCTAAATTACTAGCTGAATTAGGTTATGCTAATCCATATGAAGTCGAGGAAAATGAACTTGAATAA

Upstream 100 bases:

>100_bases
ATATCAGCATTCATACATTTACCAGTCGTGAAGTCGTCAGACATCCTTTGGTTTCAAAAATCGTAGATTGCTATGATAAT
GAGATGGAAAGGATTAAAAA

Downstream 100 bases:

>100_bases
ATTGGAAGATGGTGGGTCGTGGTTTTCTCGTTTAAAACAGTTCTTACAAGGAGAGCCACAAAATCAGGAAGAATTGGTCA
GTTTATTAAGAGACGCGCAA

Product: metal dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELEC
PLLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE

Sequences:

>Translated_158_residues
MTYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELEC
PLLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE
>Mature_157_residues
TYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELECP
LLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=136, Percent_Identity=44.1176470588235, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_LEGPA (Q5X5C5)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123719.1
- ProteinModelPortal:   Q5X5C5
- SMR:   Q5X5C5
- STRING:   Q5X5C5
- GeneID:   3117723
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp1395
- LegioList:   lpp1395
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   CLSK2392190
- BioCyc:   LPNE297246:LPP1395-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17874; Mature: 17743

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKN
CEEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCC
KPTNVLAFPCSLPANIELECPLLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLL
CCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHH
GYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKN
EEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCC
KPTNVLAFPCSLPANIELECPLLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLL
CCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHH
GYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA