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The map label for this gene is rodA [H]

Identifier: 148358905

GI number: 148358905

Start: 1585251

End: 1586369

Strand: Reverse

Name: rodA [H]

Synonym: LPC_0790

Alternate gene names: 148358905

Gene position: 1586369-1585251 (Counterclockwise)

Preceding gene: 148358906

Following gene: 148358903

Centisome position: 44.36

GC content: 41.11

Gene sequence:

>1119_bases
ATGAGCAGACAAACGACTAAGCCCGTATATCGTTTTACAGCAAAGTCCCTTCATCTGGATTTTCCATTACTTGGATTAAT
ACTTACTCTTATTGCCTTCGGACTCTTGATACTTTATAGCGCTTCAAATGCCAATATGGGCATGATCATGCGCCAATCCA
TGAGGCTGCTCTTCGCTTTTCTAATCATGTTTGTACTGGGATTTATCCCGCCACATAAATATAAAATCTGGACTCCATGG
ATTTACGGGGTTGGGTTAAGCTTGTTAATCGCAGTCATGCTAATGGGTAAAATTGGTAAAGGGGCTCAGCGCTGGTTAGA
ACTGGGGTTATTTCGTTTTCAACCTTCCGAGATTATGAAACTGGCTGTACCAATGATGGCCGCCTGGTTTTTCGACCGAC
AATCTCATCCAAGCAGCATACGCTCAATTGGTATTGCTTCCCTGATTATTTTTATTCCGGCTCTTCTTATTGCAAAACAA
CCTGATCTAGGTACTGCAATTATGGTTACTGTTGCCGGTTTATGTGTTGTATTTTTGGCAGGAATACGTTTTAAAATCAT
ATTATTAATTGCATTGCTGATGTGCTCAGCAATTCCTGTTGTCTGGAATCTGATGCATGACTACCAGAAACAAAGAGTAT
ATACCCTGATTGATCCTGAACAAGATCCACTTGGTGCTGGCTACCACATTATTCAATCCAAAATTGCCATTGGCTCAGGC
GGACTAATGGGTAAAGGATGGTTAAAAGGTAGCCAATCACACCTCAATTTCTTGCCAGAACATGCTACTGATTTTATTTT
TGCGGTAAGCGGCGAAGAATTTGGATTTGCCGGCGGATTTGCTATTGTTGCACTGATAGTCTTAATTTCGCTACGCAGTT
TAAATATTGCCAATAATGCACAAACCACTTACACGCGTCTGCTTTCAGCCAGTCTGGCCATGACCTTTTTCCTTTCTGCA
TTTGTCAATATTGGTATGGTCATGGGGATTATTCCGGTTGTAGGTATACCTCTTCCGCTCGTCAGTTATGGTGGAACAGC
TATGGTAACTTTCCTGGCAAGCTTTGGAATTTTAATGTCGATAAGCTCACACCGAATATTATTTAATAGTTTGAATTGA

Upstream 100 bases:

>100_bases
TTGCCATTGCGGTGGTAGTTGAAAATGACACTATTGCTTCCACTGTAGCACGTAAGGTACTTGACACTTATTATCAACTT
TATCCTATTAAGAAAACAAC

Downstream 100 bases:

>100_bases
TTTAATTTTTTTTGCTCTGATTTTCATATTAAAAGCTATTTCTTATATATTTTTATTTGAACGGTATTTTCCAAATTAAT
ACCACTCAGAGTTTTACTTT

Product: rod shape determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MSRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNANMGMIMRQSMRLLFAFLIMFVLGFIPPHKYKIWTPW
IYGVGLSLLIAVMLMGKIGKGAQRWLELGLFRFQPSEIMKLAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQ
PDLGTAIMVTVAGLCVVFLAGIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLIDPEQDPLGAGYHIIQSKIAIGSG
GLMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGFAGGFAIVALIVLISLRSLNIANNAQTTYTRLLSASLAMTFFLSA
FVNIGMVMGIIPVVGIPLPLVSYGGTAMVTFLASFGILMSISSHRILFNSLN

Sequences:

>Translated_372_residues
MSRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNANMGMIMRQSMRLLFAFLIMFVLGFIPPHKYKIWTPW
IYGVGLSLLIAVMLMGKIGKGAQRWLELGLFRFQPSEIMKLAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQ
PDLGTAIMVTVAGLCVVFLAGIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLIDPEQDPLGAGYHIIQSKIAIGSG
GLMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGFAGGFAIVALIVLISLRSLNIANNAQTTYTRLLSASLAMTFFLSA
FVNIGMVMGIIPVVGIPLPLVSYGGTAMVTFLASFGILMSISSHRILFNSLN
>Mature_371_residues
SRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNANMGMIMRQSMRLLFAFLIMFVLGFIPPHKYKIWTPWI
YGVGLSLLIAVMLMGKIGKGAQRWLELGLFRFQPSEIMKLAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQP
DLGTAIMVTVAGLCVVFLAGIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLIDPEQDPLGAGYHIIQSKIAIGSGG
LMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGFAGGFAIVALIVLISLRSLNIANNAQTTYTRLLSASLAMTFFLSAF
VNIGMVMGIIPVVGIPLPLVSYGGTAMVTFLASFGILMSISSHRILFNSLN

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=367, Percent_Identity=51.4986376021798, Blast_Score=360, Evalue=1e-101,
Organism=Escherichia coli, GI1786277, Length=359, Percent_Identity=30.9192200557103, Blast_Score=162, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 40826; Mature: 40695

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNANMGMIMRQSMRLLFAF
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LIMFVLGFIPPHKYKIWTPWIYGVGLSLLIAVMLMGKIGKGAQRWLELGLFRFQPSEIMK
HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
LAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQPDLGTAIMVTVAGLCVVFLA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLIDPEQDPLGAGYHIIQSKIAIGSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
GLMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGFAGGFAIVALIVLISLRSLNIANNA
CCCCCCCCCCCHHHHHCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
QTTYTRLLSASLAMTFFLSAFVNIGMVMGIIPVVGIPLPLVSYGGTAMVTFLASFGILMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHH
ISSHRILFNSLN
CCCCEEEEECCC
>Mature Secondary Structure 
SRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNANMGMIMRQSMRLLFAF
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LIMFVLGFIPPHKYKIWTPWIYGVGLSLLIAVMLMGKIGKGAQRWLELGLFRFQPSEIMK
HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
LAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQPDLGTAIMVTVAGLCVVFLA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLIDPEQDPLGAGYHIIQSKIAIGSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
GLMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGFAGGFAIVALIVLISLRSLNIANNA
CCCCCCCCCCCHHHHHCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
QTTYTRLLSASLAMTFFLSAFVNIGMVMGIIPVVGIPLPLVSYGGTAMVTFLASFGILMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHH
ISSHRILFNSLN
CCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]