Click here to switch to the map view.

The map label for this gene is yisS [H]

Identifier: 148358903

GI number: 148358903

Start: 1583399

End: 1584361

Strand: Reverse

Name: yisS [H]

Synonym: LPC_0788

Alternate gene names: 148358903

Gene position: 1584361-1583399 (Counterclockwise)

Preceding gene: 148358905

Following gene: 148358902

Centisome position: 44.3

GC content: 39.04

Gene sequence:

>963_bases
ATGAATAAAATTCGTTGTGCAGTTATTGGTGTTGGTTATCTTGGCAGGTTTCATGCCCAAAAATATCAGCTAATTCCTAA
TGCAGAGTTAGTTGCAGTTTGTGATGTAAATTCTACAGTCTGCGAAGTGGTTTCCAGTGAGTTAAATGTTCCGGCATACA
TCGATTACCATGACCTGTTGGGCAAAGTAGACGCTGTCAGTATCGCAGCGACTACCAACAAGCATTTTGAAATTGCAAAA
TTCTGTTTACAACATGGGATACATGTTTTGATTGAAAAACCAATTACTGAAACAGTATCCCAGGCTGAGGAGCTGATTCG
ACTGGCAAAACAACACCAGGTGAAGTTACAGGTAGGCCATTTAGAACGCTTCAATTCTGCTCGCCTTGCCTTGGATGAAT
ATCTGGAATTACCATTATTTATAGAATCGCAGAGACTCGCACCTTTTAACCCCCGTGGAACTGATGTAAACGTGATACTT
GATTTGATGATTCACGACATAGACATTATTCAAAATATAGTTCAGAGTCCTATTAAATCCATTACGGCTCAAGGAGCACC
GGTATTAACAAAAGCAATTGATATAGCTAATGCACGCATAAGCTTTGCTAACCACTGTGTAGCAAATGTGACAGCCAGCA
GAATCAGTTTCAAGACGGAACGAAAAACAAGAATCTTTCAAGAGAATTCTTATATTTCCATTGATTATCAAAACAAACAG
CTTGCTGTATTTAAAAAAGGTACGGGAGAAATGTTCCCTGGAATACCTGATATCACCAGAGATCAAAGGGAATTTGAAAA
AGGAGATGCATTACTGGAGGAAATCAAAGCTTTCTTGAATTGCATAGAAAATGATAGCGTACCGCTTGTTACAGGTGAGG
AAGGAAGAGATGCCCTTAAAACAGCCGAACAAATCACCGCTTTAATTAATAATAATCTTGTAGAACGCTATGCCGAATGC
TAG

Upstream 100 bases:

>100_bases
TCAATTACTATGTACCTGGCATGACAACATAGGAAATACAATTGATTTATCACTAAGGAAATGCGATCATAAGTACAAAT
AATTATCAATTGATGATGAG

Downstream 100 bases:

>100_bases
TCGTGTTGTCATAGTGGCAGGTGAAGAATCTGGTGACCACCATGCTGCCGAGCTGGTAAAGCAATTAAAAGCAGTTTATC
CGGACCTGGAAATTAGTGGC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVVSSELNVPAYIDYHDLLGKVDAVSIAATTNKHFEIAK
FCLQHGIHVLIEKPITETVSQAEELIRLAKQHQVKLQVGHLERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVIL
DLMIHDIDIIQNIVQSPIKSITAQGAPVLTKAIDIANARISFANHCVANVTASRISFKTERKTRIFQENSYISIDYQNKQ
LAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIKAFLNCIENDSVPLVTGEEGRDALKTAEQITALINNNLVERYAEC

Sequences:

>Translated_320_residues
MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVVSSELNVPAYIDYHDLLGKVDAVSIAATTNKHFEIAK
FCLQHGIHVLIEKPITETVSQAEELIRLAKQHQVKLQVGHLERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVIL
DLMIHDIDIIQNIVQSPIKSITAQGAPVLTKAIDIANARISFANHCVANVTASRISFKTERKTRIFQENSYISIDYQNKQ
LAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIKAFLNCIENDSVPLVTGEEGRDALKTAEQITALINNNLVERYAEC
>Mature_320_residues
MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVVSSELNVPAYIDYHDLLGKVDAVSIAATTNKHFEIAK
FCLQHGIHVLIEKPITETVSQAEELIRLAKQHQVKLQVGHLERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVIL
DLMIHDIDIIQNIVQSPIKSITAQGAPVLTKAIDIANARISFANHCVANVTASRISFKTERKTRIFQENSYISIDYQNKQ
LAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIKAFLNCIENDSVPLVTGEEGRDALKTAEQITALINNNLVERYAEC

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=215, Percent_Identity=28.8372093023256, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35757; Mature: 35757

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVVSSELNVPAYIDYHDLL
CCCEEEEEEEEHHHHHHHCHHEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEECHHHHH
GKVDAVSIAATTNKHFEIAKFCLQHGIHVLIEKPITETVSQAEELIRLAKQHQVKLQVGH
CCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHEEEEECH
LERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVILDLMIHDIDIIQNIVQSPIKS
HHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ITAQGAPVLTKAIDIANARISFANHCVANVTASRISFKTERKTRIFQENSYISIDYQNKQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHEECCCEEEEEECCCE
LAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIKAFLNCIENDSVPLVTGEEGRDALK
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
TAEQITALINNNLVERYAEC
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVVSSELNVPAYIDYHDLL
CCCEEEEEEEEHHHHHHHCHHEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEECHHHHH
GKVDAVSIAATTNKHFEIAKFCLQHGIHVLIEKPITETVSQAEELIRLAKQHQVKLQVGH
CCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHEEEEECH
LERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVILDLMIHDIDIIQNIVQSPIKS
HHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ITAQGAPVLTKAIDIANARISFANHCVANVTASRISFKTERKTRIFQENSYISIDYQNKQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHEECCCEEEEEECCCE
LAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIKAFLNCIENDSVPLVTGEEGRDALK
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
TAEQITALINNNLVERYAEC
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]