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The map label for this gene is nlpD [C]

Identifier: 148358825

GI number: 148358825

Start: 1491949

End: 1492689

Strand: Direct

Name: nlpD [C]

Synonym: LPC_0708

Alternate gene names: 148358825

Gene position: 1491949-1492689 (Clockwise)

Preceding gene: 148358824

Following gene: 148358826

Centisome position: 41.72

GC content: 40.08

Gene sequence:

>741_bases
ATGCGCCTATTTCGCAAACAATTAATTTGTATTTTTTTTATCTTAAGTGTTGCTGGTTGTGGGACAAGAAGTGATTTGGC
TCCTGTTACCGAGCTAAAATGGCAGCCTTATTCAAAATATCAGAAATTCCATACGGTGCGATCAGGTGAGACCCTTTATG
CTATAGCATTTCGTTATGATACTGATTATCGGCGGCTTGCGATTATCAATCACCTAAGGCCGCCTTATTCCTTGCGAGTA
GGACAAGTGTTAAGTTTAAAAGGCATCGTGCCAAAATCAAATCACTTTCATTCAGCTCCCAGAGCTAACTTACATATTAC
CCATAAGCCAAAACAAAAAATTATTTATTCTCCAGCTTATAATGTACGTTCTTCCTCTGGTTGGCTGTGGCCAGTTACTG
GTCGTGTTGTTACAACATTCATTCCTTCTCAGGGGAAAAAAGGCATAAATATTGCATGTAACAGAGGAGACAAAGTTAGA
GCTTCAGCGAGTGGAGTTGTGGCTTATGCTGGCAGCGGTTTGCCTGGGTATGGTAATTTAATCATTATTAAACACAGTAA
TGAATATTTAACTGCATACGGTAACAATGCCAGAAATCTGGTGACAGAAGGGCAGCGTGTTAGTGCGGGGCAGGTAATAG
CAGAAGCTGGTTTAATAGATAGATCATACTGGGGTGTTCATTTTGAAATTAGAAGAGCAGGGGTGCCAGTTAATCCATTG
AATTATCTACAAAAAGGTTGA

Upstream 100 bases:

>100_bases
GCTTCATTTAGACATGACTCATTATAAGTTATTTGATCATTTATCTAACTTGCTTAACGAAATTTGCATAGAAAATTAAT
AAATAATAAATGAGATAATG

Downstream 100 bases:

>100_bases
CATATAACTCATAGTTATAGCAACAATAGGCTTGTTAAGAAGTAAAAAACTATTTCAAGGCATAGCTAAACATATAGGTG
ATACAATGCAAGATGAAGAA

Product: novel lipoprotein like NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLRV
GQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVR
ASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNPL
NYLQKG

Sequences:

>Translated_246_residues
MRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLRV
GQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVR
ASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNPL
NYLQKG
>Mature_246_residues
MRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLRV
GQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVR
ASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNPL
NYLQKG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=247, Percent_Identity=36.0323886639676, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789099, Length=254, Percent_Identity=35.8267716535433, Blast_Score=134, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27443; Mature: 27443

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEEC
TDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAY
CCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCCC
NVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLPGYGNL
CCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCE
IIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNPL
EEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCHH
NYLQKG
HHHCCC
>Mature Secondary Structure
MRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEEC
TDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAY
CCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCCC
NVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLPGYGNL
CCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCE
IIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNPL
EEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCHH
NYLQKG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]