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The map label for this gene is yfgC [H]

Identifier: 148358763

GI number: 148358763

Start: 1423652

End: 1425088

Strand: Reverse

Name: yfgC [H]

Synonym: LPC_0642

Alternate gene names: 148358763

Gene position: 1425088-1423652 (Counterclockwise)

Preceding gene: 148358773

Following gene: 148358756

Centisome position: 39.85

GC content: 38.14

Gene sequence:

>1437_bases
ATGATTAAATTGAACTTAAATTATAAGTTAATCACGAAAAAGACATTACCTAAACTATTTTACTGGGGTTTGGGGATCGT
CTTCTTTTTTTTAGCACCTACAACTAATGCCGGAAGTCTTTCACCCTATACAACCAAAGAACTGGAACAATTAGAAAGAG
AATTTATTCAACTTATTAATCAATCGGACAGCGTAGAGCGCAATCCTTTGGCCAGTCAATACATCAACTCCATAGGAAAA
AAACTGGCACATTATGGCCGTATCAAAACACCTTATTTTTTTATTGTTAAATCCAAAGAAATCAATGCATTTGCAGGTCC
AGGAGGGTACATAGGCATTAATACCCAACTCATTTTAACGAGCAGCAATGAAAGTGAACTGGCAGCTGTAATGGCTCATG
AAATTGCGCATGTTCGCTTACATCATCTTTACAGCATTATAGAACACCAAAAACAGATGCGTGTTCCATTATTAGCCTCT
ATTCTGGCGTCTGCAGCCTTGGGCGTCTTGAATCCAACTGTCGGGATGGGCGCTATGATGGCATCCGTTTCCGGATTTTC
CCAGGACAACATCAATTTTACACGCTCAAAAGAAAAAGAAGCCGACAGAATTGGTATAGACATGCTTATTAAGGCAGGCT
TCAATCCTCAAGGTATGGCCGCATTTTTTAATAAAATGCAAGAAAATTCCCGTTATTATTACACTGCCAATATTCCAGCA
ATACTGCGGACTCACCCCCTGGATGCTGACAGGATAGCTGAGGCTGAAAACAGAACCAGCCGTTTGCCTAAAAAACATTA
TACTGATTCTTTGGACTATGCCTTATTTAAAGAGTTAATCAGAGTTTCTGTCGCCTCTAATAATAAACAAATTCTTGATT
ATTATGAGCATCATTGCCATAAAAAAAATCCCGCCACTGCTTGCCAGTATGGGTACGTACTTGCCTTGTTAAATAATAAC
AATTTCCAAAAAGCGGCTGAAAAATTAAACCCTTTACTGTTACAGGATAATAGTAATCTCAATTTTCAAATTGCTATGGC
TCAAGCTGAATTAGGTTTATCACAATATCAATCAGCACTCTCCCGTCTTGCTGAATTACAAAATAATTTTCCTGACAATT
ATGCTGCTCTAATGGCATACGCCCAAGGATTGTTAACCGCAAATCAACCTGAAAAAGCTACAGCCATACTTCTTAAGGGT
AGTAGGCAATACAAAGAGGACTTACCGCTTTGCCGAGAATTGGCAAGAGCTCAAGCTGAATCCCATCAGAAAAGTTATGC
CTATTTTACTCAAGCACAATGCTTGCTACTTGAGGGGCAAAAAAGAGGAGCTATTGCTCAATTAAAAGTAGCGCAAAAAA
TGGCCAAAAAGGATGCTTATTTATCCGCAAGAATTTCAGCAAAAATTGATGAAATAAAATTTATGGTTGAAAACTAA

Upstream 100 bases:

>100_bases
GCTTGTTCAAGTGCTGCAAGCAGAAACTGTTCGTGCATATATTAACCACCTTCTTAATGTGGTCGAATGATAACAAATTA
TTCAATTATTGAGTAGCCTA

Downstream 100 bases:

>100_bases
TCTAAATATAGATTAATTAAAATAAAATAAACTCATATACCATTCGGCAAGAGCATAAGGGATTAATTTTTCTTTATCCA
AGTCCAATGTAATCAACCAA

Product: Zn-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPEKATAILLKG
SRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKMAKKDAYLSARISAKIDEIKFMVEN

Sequences:

>Translated_478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPEKATAILLKG
SRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKMAKKDAYLSARISAKIDEIKFMVEN
>Mature_478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPEKATAILLKG
SRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKMAKKDAYLSARISAKIDEIKFMVEN

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=447, Percent_Identity=31.9910514541387, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53679; Mature: 53679

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLIN
CEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
QSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEEEEEE
SSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGMGAMM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
ASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
HHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEECCCE
ILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCH
EEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSAL
CCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHHHHHH
SRLAELQNNFPDNYAALMAYAQGLLTANQPEKATAILLKGSRQYKEDLPLCRELARAQAE
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHHHHH
SHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKMAKKDAYLSARISAKIDEIKFMVEN
HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLIN
CEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
QSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEEEEEE
SSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGMGAMM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
ASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
HHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEECCCE
ILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCH
EEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSAL
CCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHHHHHH
SRLAELQNNFPDNYAALMAYAQGLLTANQPEKATAILLKGSRQYKEDLPLCRELARAQAE
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHHHHH
SHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKMAKKDAYLSARISAKIDEIKFMVEN
HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]