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The map label for this gene is 148358570

Identifier: 148358570

GI number: 148358570

Start: 3222910

End: 3223740

Strand: Reverse

Name: 148358570

Synonym: LPC_0442

Alternate gene names: NA

Gene position: 3223740-3222910 (Counterclockwise)

Preceding gene: 148358569

Following gene: 148358571

Centisome position: 90.14

GC content: 36.46

Gene sequence:

>831_bases
ATGCAACTTTCTTCTGAGCAATGTGATTTTTTTTTCACAAATGGATATTTGGTAATAAATAATTTCTTTTCAGAATCTGT
ATGCGATCTATTAAAGCAGCGCATTGAAACATTGCTTGAAAATAATCAGGCAGAGATACCTAAAACAATTTTTTCCACGC
AAACTAACGAGCATGCTAAAAAACAATATTTCCTTGATTCTGGAGATAAAATTCATTATTTTTTTGAGCCGGGTGCTTTT
GATGAAGCCGGTGATTGTCTACGCCCTTTTAATCAATCAATTAATAAAATTGGACACGCTTTACATGAACTGGATCCTGT
TTTTAGGCAATATTCCCGAGATGATCGAATTAAGAAGATAGCACATCAGCTTGGGTTGAAAACACTTGGATTGGTACAAT
CGATGTACATATTCAAACAGCCGGGAATAGGAGCTGAAGTACTTTGTCATCAGGATAGTACCTATATTTTCGGAGAGGAT
AGTGATGCTTTAGGGTTTTGGTTTGCAATAGAGGATGCTACTTTGGAAAATGGCTGTTTGGAAGTGATTCCAAGCCCTTG
TACCACCCCCTTAAAGCAGAGGATGTTTCGTCGAGAAAACGAAATTTATTTTGAAAATTTCGATTCAAGTCCTTGGCCAG
AAGAAAACAGTGTCCCTTTACCTGTTAAAAAAGGCGCCTTAATTATACTACATGGCAGAGTTCCACATAAAAGCCAGGCT
AATTTTTCTAATCAATCCAGACATGCCTATACTTTGCATTTGGTTGATATTTCATTACCTTATCCTGAGAAAAATTGGTT
GCAATGGCCTAATGGGATTCCTTGTTTATAA

Upstream 100 bases:

>100_bases
AGGTTTTTAATAGAGCATTTCGCTTATGCTCATTAAAAGCCGTTTGCCCTTACCCTGGTGATTTCCCCAAGTACTGATTT
TGATTTTTGAGGAGCATAGG

Downstream 100 bases:

>100_bases
CATCACTAGTTTAGAGATCTCAGAGAATACAACATCAAAAGCTTCTGATTTTTAGAAAATTGTGCTGGAGAACTCTATAA
TTTACAAGAGGCTCTTGGTA

Product: phytanoyl-CoA dioxygenase PhyH

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRIETLLENNQAEIPKTIFSTQTNEHAKKQYFLDSGDKIHYFFEPGAF
DEAGDCLRPFNQSINKIGHALHELDPVFRQYSRDDRIKKIAHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQDSTYIFGED
SDALGFWFAIEDATLENGCLEVIPSPCTTPLKQRMFRRENEIYFENFDSSPWPEENSVPLPVKKGALIILHGRVPHKSQA
NFSNQSRHAYTLHLVDISLPYPEKNWLQWPNGIPCL

Sequences:

>Translated_276_residues
MQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRIETLLENNQAEIPKTIFSTQTNEHAKKQYFLDSGDKIHYFFEPGAF
DEAGDCLRPFNQSINKIGHALHELDPVFRQYSRDDRIKKIAHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQDSTYIFGED
SDALGFWFAIEDATLENGCLEVIPSPCTTPLKQRMFRRENEIYFENFDSSPWPEENSVPLPVKKGALIILHGRVPHKSQA
NFSNQSRHAYTLHLVDISLPYPEKNWLQWPNGIPCL
>Mature_276_residues
MQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRIETLLENNQAEIPKTIFSTQTNEHAKKQYFLDSGDKIHYFFEPGAF
DEAGDCLRPFNQSINKIGHALHELDPVFRQYSRDDRIKKIAHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQDSTYIFGED
SDALGFWFAIEDATLENGCLEVIPSPCTTPLKQRMFRRENEIYFENFDSSPWPEENSVPLPVKKGALIILHGRVPHKSQA
NFSNQSRHAYTLHLVDISLPYPEKNWLQWPNGIPCL

Specific function: Unknown

COG id: COG5285

COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI154937350, Length=278, Percent_Identity=44.9640287769784, Blast_Score=221, Evalue=4e-58,
Organism=Homo sapiens, GI154937352, Length=278, Percent_Identity=41.726618705036, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI154937348, Length=157, Percent_Identity=43.312101910828, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17544346, Length=268, Percent_Identity=40.2985074626866, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI161078170, Length=284, Percent_Identity=38.0281690140845, Blast_Score=195, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31725; Mature: 31725

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRIETLLENNQAEIPKTIFSTQTNEHAK
CCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHH
KQYFLDSGDKIHYFFEPGAFDEAGDCLRPFNQSINKIGHALHELDPVFRQYSRDDRIKKI
HHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQDSTYIFGEDSDALGFWFAIEDATLENGCL
HHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCHH
EVIPSPCTTPLKQRMFRRENEIYFENFDSSPWPEENSVPLPVKKGALIILHGRVPHKSQA
EECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
NFSNQSRHAYTLHLVDISLPYPEKNWLQWPNGIPCL
CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRIETLLENNQAEIPKTIFSTQTNEHAK
CCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHH
KQYFLDSGDKIHYFFEPGAFDEAGDCLRPFNQSINKIGHALHELDPVFRQYSRDDRIKKI
HHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQDSTYIFGEDSDALGFWFAIEDATLENGCL
HHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCHH
EVIPSPCTTPLKQRMFRRENEIYFENFDSSPWPEENSVPLPVKKGALIILHGRVPHKSQA
EECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
NFSNQSRHAYTLHLVDISLPYPEKNWLQWPNGIPCL
CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA