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The map label for this gene is yhjC [C]

Identifier: 148358484

GI number: 148358484

Start: 376178

End: 377041

Strand: Direct

Name: yhjC [C]

Synonym: LPC_0350

Alternate gene names: 148358484

Gene position: 376178-377041 (Clockwise)

Preceding gene: 148358481

Following gene: 148358485

Centisome position: 10.52

GC content: 40.74

Gene sequence:

>864_bases
ATGGGTAAATTTGATCAAATCACTTACTTTATTGCTGTTGTTGAAGAGCATGGTTTTGCAGCAGCCGCAAGAAAATTTGG
CGTATCTACAGCCGCTGTTAGCAGGCAGATTGCACGTCTTGAAGCCGAGCTAAAAGCAGAGCTGTTGGTGAGAACAACTA
GAAAATTATCATTAACTGACATCGGGGCTCGCTATTATCAGCAATGCAAAAAGACTCTTTTGGAGTTGAATGAGGCAGAA
ATAGCGATTGCTAATAGTCGGAATGAAGCGGTGGGTATATTAAATGTTACTAGCAGCCGTTATTTTGCTATGAGATTTCT
TCTCCCTTATTTACCAGAATTCATGGAGTTAAATCCAAAATTGCAGATTAAAATTGAATTGGCGGAAAGATTTCCTGATT
TAGCTCAGGAAAACGTTGATGTGCTTTTTGGTGTTTCTATGGAGGGCCCCCCTGAACTGGTGCGCAAGCGAGTTTCTACA
ACACGGTATGTGCTTTGCGCATCGCCGGATTATCTGGCAAAAAATGGTATTCCCAAAACACCTTCCGAACTTGGGAAGCA
CCGTTATATCACTCACAGCATGCGAAATCCTGATAATTTGGTTACATTTAAAGACAATGAGCAGATTTATGTTGAACCTG
TGTTATGGCTCAATGATAGTCGTGCCTTGTGTGAGTGCGCCTTACTTGGGATGGGAATTATCAAATTACATGAATACATA
GTGGCTGAAGCATTGCAAGATGGGCGCCTCATTGAGGTTTTGCCTGAATTCCAAGAGTCCAGTTTATCGGTGTACCTTTA
TTATCAGGCAAGCCGATATTTACAGCCTAAGATACGAAGATTTATTGATTTTTTTACAAAATAA

Upstream 100 bases:

>100_bases
CGATTAACAATTAAGATCAGTATAATTATTGACAAAATAATTAACAATATCATAATTAATTAACATTTATTAACTATAAT
GCAATAATAAAATCGAAATC

Downstream 100 bases:

>100_bases
CAATAAAAGCAAGTATTTTGTGTCATTCTAGCAGATCTGAGTTCAAAGCAAAAAAGTTCGGGGGCACGTGCTTTTTTTAG
AGAGAGATGTCAGGTTATGC

Product: LysR family transporter transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGARYYQQCKKTLLELNEAE
IAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVST
TRYVLCASPDYLAKNGIPKTPSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLNDSRALCECALLGMGIIKLHEYI
VAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDFFTK

Sequences:

>Translated_287_residues
MGKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGARYYQQCKKTLLELNEAE
IAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVST
TRYVLCASPDYLAKNGIPKTPSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLNDSRALCECALLGMGIIKLHEYI
VAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDFFTK
>Mature_286_residues
GKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGARYYQQCKKTLLELNEAEI
AIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVSTT
RYVLCASPDYLAKNGIPKTPSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLNDSRALCECALLGMGIIKLHEYIV
AEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDFFTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.7241379310345, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=29.5138888888889, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.6206896551724, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=28.4722222222222, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=27.9151943462898, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787128, Length=279, Percent_Identity=27.2401433691756, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=25.3571428571429, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=26.7399267399267, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=178, Percent_Identity=26.4044943820225, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=151, Percent_Identity=25.8278145695364, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=151, Percent_Identity=30.4635761589404, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32828; Mature: 32697

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS50931 HTH_LYSR ; PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTD
CCCHHHHEEEEEEHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IGARYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPK
HHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCHHHHCCCCC
LQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVSTTRYVLCASPDYLAKNGIPKT
EEEEEEHHHCCCHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCCCC
PSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLNDSRALCECALLGMGIIKLHEYI
HHHHCCCEEEECCCCCCCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDFFTK
HHHHHCCCCEEEECCHHCCCCEEEEEEEECCHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
GKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTD
CCHHHHEEEEEEHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IGARYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPK
HHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCHHHHCCCCC
LQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVSTTRYVLCASPDYLAKNGIPKT
EEEEEEHHHCCCHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCCCC
PSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLNDSRALCECALLGMGIIKLHEYI
HHHHCCCEEEECCCCCCCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDFFTK
HHHHHCCCCEEEECCHHCCCCEEEEEEEECCHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]