Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 148358410

GI number: 148358410

Start: 288157

End: 289146

Strand: Direct

Name: cydB [H]

Synonym: LPC_0275

Alternate gene names: 148358410

Gene position: 288157-289146 (Clockwise)

Preceding gene: 148358409

Following gene: 148358414

Centisome position: 8.06

GC content: 41.31

Gene sequence:

>990_bases
ATGTTACCGTTTATTTTCGCTACACTTCTTGGGTTTATCGTTTTGATGTATGTCATTTTAGATGGTTTTGATTTGGGAAT
TGGTATTTTATTTCCTTTCACCTCAAGTGAGAGCGAACGCGATAAAATGATGAACTCGATTGCACCTGTTTGGGATGGCA
ATGAAACCTGGCTGGTTTTTGGAGGAGCCATGCTTTATGGTGCATTTCCACAAGTTTACGGTTTGCTTTTGCCCATCCTT
TACATGCCTATCATGCTTATGCTGATTGCATTGATATTCCGTGGTGTGAGTTTTGAGTTTCGTTATAAGGCCAAGAGGTC
AAAAACTTTGTGGAATTGGTCGTTTTCAATCAGTTCGGTTGCGGCCACTTTTTTGCAAGGAGTTATTCTTGGCGCTTTTG
TACAGGGGTTTTCTATTAATGAATCTTCCATGACTATCAATGATCCGGACTGGCTTACCCCTTTTAGCCTTTGTACCGGT
ATCGCTTTGGTGTGTGGGTATGCGCTTTTGGGGGCTACCTGGATGATTATCAAAAGCACGGGAAGATTGCAGCGTAAAAT
GGTTCATTATGCCAGAGGCTTGTTAGTCTTGGTCAGCTTTTTCCTGCTTTTCGTTAGTATTTGGACACCTTTGCATAGTG
AGGAAGTGTTTCATCGTTGGTATAGTTTTCCGAATATGCTACTACTGAGCCCCTTGCCCTTGATAGCCTTAATAGCTATT
TACCTCGTATGGCAGAACTTAAGTTCCGGCAGTGAATACAAACCGTTTATTTACAGTATCATTATATTTTTATGCTCCTA
TATAGGAATTGCAATCAGTGTCTACCCTTACCTGATTCCTCATCACGTGACTCTTTGGGAGGCGGCAGCACCTGATTCCA
CACTTGTTTTTATCTTGATAGGTGTCGCTATCATGCTGCCAATCCTTCTTGCCTATACCCTTTATGCTTATTACCTTTTT
CGGGGTAAATCATCAGAAAATTATCACTAG

Upstream 100 bases:

>100_bases
TGCTGAGGCTCATCTCTCATGGACCTGGAATTCTTGAAGAGGATGAAGTGGAACATCATGCTTTTCAATATATGACCGAT
TTCCCCAAGGAGAAAAAATA

Downstream 100 bases:

>100_bases
TTATTTTCTGGGCGTCGAATTATTTTTAAGCCATTTAGGGAAAAACATGGGGGTCACTTTTTGATACTCTATGTAAAGAT
TGCCTCTGGATTCAATCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMMNSIAPVWDGNETWLVFGGAMLYGAFPQVYGLLLPIL
YMPIMLMLIALIFRGVSFEFRYKAKRSKTLWNWSFSISSVAATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTG
IALVCGYALLGATWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPNMLLLSPLPLIALIAI
YLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYPYLIPHHVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLF
RGKSSENYH

Sequences:

>Translated_329_residues
MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMMNSIAPVWDGNETWLVFGGAMLYGAFPQVYGLLLPIL
YMPIMLMLIALIFRGVSFEFRYKAKRSKTLWNWSFSISSVAATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTG
IALVCGYALLGATWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPNMLLLSPLPLIALIAI
YLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYPYLIPHHVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLF
RGKSSENYH
>Mature_329_residues
MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMMNSIAPVWDGNETWLVFGGAMLYGAFPQVYGLLLPIL
YMPIMLMLIALIFRGVSFEFRYKAKRSKTLWNWSFSISSVAATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTG
IALVCGYALLGATWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPNMLLLSPLPLIALIAI
YLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYPYLIPHHVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLF
RGKSSENYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=28.1420765027322, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=26.7955801104972, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37252; Mature: 37252

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMMNSIAPVWDGNETWLVF
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
GGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRYKAKRSKTLWNWSFSISSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCEEEEECCHHHHH
AATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTGIALVCGYALLGATWMIIKST
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPNMLLLSPLPLIALIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHH
YLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYPYLIPHHVTLWEAAAPDSTLVFILI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHH
GVAIMLPILLAYTLYAYYLFRGKSSENYH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMMNSIAPVWDGNETWLVF
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
GGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRYKAKRSKTLWNWSFSISSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCEEEEECCHHHHH
AATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTGIALVCGYALLGATWMIIKST
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPNMLLLSPLPLIALIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHH
YLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYPYLIPHHVTLWEAAAPDSTLVFILI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHH
GVAIMLPILLAYTLYAYYLFRGKSSENYH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]