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The map label for this gene is yfdE [H]

Identifier: 148358403

GI number: 148358403

Start: 278756

End: 279808

Strand: Direct

Name: yfdE [H]

Synonym: LPC_0268

Alternate gene names: 148358403

Gene position: 278756-279808 (Clockwise)

Preceding gene: 148358402

Following gene: 148358408

Centisome position: 7.79

GC content: 43.02

Gene sequence:

>1053_bases
ATGTTGAAGGGCTTAAAGGTCATTGATCTGAGTACGGTTCTTGCAGGGCCCTCTGTAGGCACTTTTTTTGCCGAGTTAGG
TGCTTCAGTTGTTAAAATTGAACATCCTGTGCATAAGGATGTGACAAGAACATGGAAACTCCCAGGAGAGGATCCTCATT
CTGAGATTTCAGCTTATTTTGCCAGTGTTAATTTCGGAAAGGACTATTTGTTTTTAGATCTCATGAAGGAAGAGGATTAT
CTCTGTTTCCTTAACCTTATTGCAGAAGCAGATATTTTAATTATGAATTTTAAAAAGGGAGATGACATAAAGCTACGAAT
ACAAGCCGATCATCTTCTCAGTATAAACCCGCGCCTAATTATCGGAAAAATCAATGGTTATGGTGAAGAAAGCGAGCGCG
TTGCCTATGATCTTGTTCTCCAGGGTGAAAGCGGTTTTATGTCAATCAATGGGACACCTGACAGCGGCCCAGTTAAAATG
CCTGTCGCTCTAATCGATGTCCTCGCAGCTCACCACCTGAAAGAGGCTATCCTTCTGGCTCTCTACAATCGGGAAAAAAG
CGGGAAAGGCAAGGTTGTCTCTGTTTCACTTTATGATGCAGCTGTCAGCAGTCTTGTCAATCAGGCATCTAATTACTTGA
TGACTGGGCAGGTGCCGCAGCGTATCGGTTCACTGCATCCAAATATCGCTCCCTATGGCGAATTGTTCCGTACAGATGAT
GCTGCGCTTATTATCTTGGCTATAGGTTCTGATAGGCATTTTGCAAAACTATGCGCTGTCCTTGGGCTAAACGATTTGCC
GGATAATGATGAATTTAAGCACAATCAAAACAGGGTAAGGAACCGAGAAAAGCTCGCTTTATTAATTGCTGAACAAACAG
CGAAATGGCAAAGTAACAAGCTTCTCGAACTGTTGCACAGTGAAAATGTTCCAGCTGGGAAAATTATGGATCTCAAGGAC
GTTTTCGATGATGAGCGTGCGAAATCTCTCATTCGAAAGGAACTCATCGGCGATATTACCACGGCGCGTGTTACATCGGT
TGTTTTTAAATAG

Upstream 100 bases:

>100_bases
GGATATTGATTTGAGGTCCCTAGGGTCAGTTTTGCAGAATTTCCCAATGTAAAAGCTTGTAAAAACAACGAATGTTTATT
GAGATTTGGAAAACAGATAT

Downstream 100 bases:

>100_bases
ATTAGGACTTATCTAAAACCCTAATGTGGGCAGGGTTTAAATTTTGTATGCAAGAAAAGCGAATATTTCAAATGCAAATT
TAAACTCTGCTCCAAATTGC

Product: acyl CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MLKGLKVIDLSTVLAGPSVGTFFAELGASVVKIEHPVHKDVTRTWKLPGEDPHSEISAYFASVNFGKDYLFLDLMKEEDY
LCFLNLIAEADILIMNFKKGDDIKLRIQADHLLSINPRLIIGKINGYGEESERVAYDLVLQGESGFMSINGTPDSGPVKM
PVALIDVLAAHHLKEAILLALYNREKSGKGKVVSVSLYDAAVSSLVNQASNYLMTGQVPQRIGSLHPNIAPYGELFRTDD
AALIILAIGSDRHFAKLCAVLGLNDLPDNDEFKHNQNRVRNREKLALLIAEQTAKWQSNKLLELLHSENVPAGKIMDLKD
VFDDERAKSLIRKELIGDITTARVTSVVFK

Sequences:

>Translated_350_residues
MLKGLKVIDLSTVLAGPSVGTFFAELGASVVKIEHPVHKDVTRTWKLPGEDPHSEISAYFASVNFGKDYLFLDLMKEEDY
LCFLNLIAEADILIMNFKKGDDIKLRIQADHLLSINPRLIIGKINGYGEESERVAYDLVLQGESGFMSINGTPDSGPVKM
PVALIDVLAAHHLKEAILLALYNREKSGKGKVVSVSLYDAAVSSLVNQASNYLMTGQVPQRIGSLHPNIAPYGELFRTDD
AALIILAIGSDRHFAKLCAVLGLNDLPDNDEFKHNQNRVRNREKLALLIAEQTAKWQSNKLLELLHSENVPAGKIMDLKD
VFDDERAKSLIRKELIGDITTARVTSVVFK
>Mature_350_residues
MLKGLKVIDLSTVLAGPSVGTFFAELGASVVKIEHPVHKDVTRTWKLPGEDPHSEISAYFASVNFGKDYLFLDLMKEEDY
LCFLNLIAEADILIMNFKKGDDIKLRIQADHLLSINPRLIIGKINGYGEESERVAYDLVLQGESGFMSINGTPDSGPVKM
PVALIDVLAAHHLKEAILLALYNREKSGKGKVVSVSLYDAAVSSLVNQASNYLMTGQVPQRIGSLHPNIAPYGELFRTDD
AALIILAIGSDRHFAKLCAVLGLNDLPDNDEFKHNQNRVRNREKLALLIAEQTAKWQSNKLLELLHSENVPAGKIMDLKD
VFDDERAKSLIRKELIGDITTARVTSVVFK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=330, Percent_Identity=32.7272727272727, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=32.7272727272727, Blast_Score=179, Evalue=2e-45,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=31.5151515151515, Blast_Score=155, Evalue=4e-38,
Organism=Homo sapiens, GI300863126, Length=330, Percent_Identity=29.0909090909091, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266456254, Length=306, Percent_Identity=26.797385620915, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42794625, Length=306, Percent_Identity=26.797385620915, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458393, Length=274, Percent_Identity=27.7372262773723, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=27.6264591439689, Blast_Score=79, Evalue=6e-15,
Organism=Escherichia coli, GI87082093, Length=323, Percent_Identity=36.2229102167183, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=37.6811594202899, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1786222, Length=334, Percent_Identity=24.251497005988, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648431, Length=332, Percent_Identity=33.1325301204819, Blast_Score=175, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24585488, Length=357, Percent_Identity=24.3697478991597, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38704; Mature: 38704

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGLKVIDLSTVLAGPSVGTFFAELGASVVKIEHPVHKDVTRTWKLPGEDPHSEISAYF
CCCCCEEEEEHHHHCCCCHHHHHHHHCCEEEEECCCHHHCHHHEECCCCCCCHHHHHHHH
ASVNFGKDYLFLDLMKEEDYLCFLNLIAEADILIMNFKKGDDIKLRIQADHLLSINPRLI
EEECCCCCEEEEEEECCCCCEEEEEHHHCCCEEEEEECCCCCEEEEEEECCEEECCCEEE
IGKINGYGEESERVAYDLVLQGESGFMSINGTPDSGPVKMPVALIDVLAAHHLKEAILLA
EECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LYNREKSGKGKVVSVSLYDAAVSSLVNQASNYLMTGQVPQRIGSLHPNIAPYGELFRTDD
HCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCEEEECCHHHHHHCCCCCCCCCHHHHCCCC
AALIILAIGSDRHFAKLCAVLGLNDLPDNDEFKHNQNRVRNREKLALLIAEQTAKWQSNK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHEEEEEEHHHCCCHHHH
LLELLHSENVPAGKIMDLKDVFDDERAKSLIRKELIGDITTARVTSVVFK
HHHHHHCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MLKGLKVIDLSTVLAGPSVGTFFAELGASVVKIEHPVHKDVTRTWKLPGEDPHSEISAYF
CCCCCEEEEEHHHHCCCCHHHHHHHHCCEEEEECCCHHHCHHHEECCCCCCCHHHHHHHH
ASVNFGKDYLFLDLMKEEDYLCFLNLIAEADILIMNFKKGDDIKLRIQADHLLSINPRLI
EEECCCCCEEEEEEECCCCCEEEEEHHHCCCEEEEEECCCCCEEEEEEECCEEECCCEEE
IGKINGYGEESERVAYDLVLQGESGFMSINGTPDSGPVKMPVALIDVLAAHHLKEAILLA
EECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LYNREKSGKGKVVSVSLYDAAVSSLVNQASNYLMTGQVPQRIGSLHPNIAPYGELFRTDD
HCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCEEEECCHHHHHHCCCCCCCCCHHHHCCCC
AALIILAIGSDRHFAKLCAVLGLNDLPDNDEFKHNQNRVRNREKLALLIAEQTAKWQSNK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHEEEEEEHHHCCCHHHH
LLELLHSENVPAGKIMDLKDVFDDERAKSLIRKELIGDITTARVTSVVFK
HHHHHHCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]