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The map label for this gene is intB [H]

Identifier: 148358339

GI number: 148358339

Start: 216356

End: 217576

Strand: Direct

Name: intB [H]

Synonym: LPC_0202

Alternate gene names: 148358339

Gene position: 216356-217576 (Clockwise)

Preceding gene: 148358336

Following gene: 148358340

Centisome position: 6.05

GC content: 41.69

Gene sequence:

>1221_bases
ATGACAGAAAACAAAAGGAAAGGCCCACTACAAGATACCACCATCCGTAATGCCAAAGCAGAGAAAAAACCCTATAAAAT
GCCTGATGAGCGAGGTTTATATCTAGAGGTTGCCCCTTCTGGAGGCAAGTGGTGGCGTTTTAGGTATCGCTTCGAGGGTA
AAGACAAAAGAATCTCTTTAGGCATTTATCCTGATGTTAGCTTAAAACAAGCTCGAGACCGCAGAGATGAATGTCGCACG
ATGGTTGCAAATGAAATTGATCCTAGCGAGCATCGCAAAGCTAAAAAGGCAGCAAAAATTGAAAATGCTGCAAATAGTTT
TGAAGTTGTAGCTAGAGAATGGTTTTTAAAATTCTCCTCTTCTGGACTATGGTCAGAAGGTCATGCAGACAAAATTATTC
AGAGATTAGAACGGGACATTTTCCCATGGATTGGGAATATTCCAATTTCAGATATTAATGCACCAAAGCTTTTAAGTGTT
GTGCGGCGAATTGAAAGTCGAGGAGCACTAGATACAGCTCACCGCGCATTAGGCAATTGCGGACAAATATTTCGATATGC
TATTGCTACAGGTCGTGCAGAGCGTGATCCTTCCCAAGATTTACGAAGTGCATTACCACCAGTGAAGGAAACACATTTTG
CTGCAGTTACTGAACCTAAAGATGTGGCTAAATTACTAAGAGCTTTAGATGACTACGAAGGAACATTAATAGTAAAGTGT
GCATTACGTTTAGCTCCATTAGTATTTGTTCGCCCTGGGGAATTGCGTTCTGCAGAGTGGGAGCATATTGATTTTGACAC
GGCAGAATGGCGTTACAAAGTTACAAAAACAGATACTCTTCATATTGTCCCCCTTTCACAACAGGCCTTAGATATATTAA
AAGAACTTCACCCTCAGACTGGTCGCGATAGATATGTTTTCCCAAGCGCTCGGGATAAAAAGCGCCCAATGAGTGATAAT
GCGATTCTGGCCGCTATGCGTCGTATGGGCATTAATAAAGAAGAAATGACTACCCATGGTTTTAGAGCAATGGCTAGGAC
TATTCTAGATGAGGTTTTGCAGTTTCGGCCAGACATCATTGAACATCAATTAGCACATGCTGTACGAGATCCTAATGGTC
GCGCATATAACCGAACAGCTCATTTGCCTGAGCGCAAGAAAATGATGCAGGCGTGGGCTGATTATTTGGATGAATTGAAG
TTGAGAAAATCAGAATTATAA

Upstream 100 bases:

>100_bases
ATAGCATCCAATATCATCCTAAGAAATTTATTGACAGCCATGGGCAACTGTGGGCAAGATCGCGGACAACAGATGTCTTG
CGAAATAGAGTTGCCCAAAA

Downstream 100 bases:

>100_bases
CCATTATCAAAAGGAATTATTGTGAAAACAGAGATTATTCATATATTAACTACCAATTTTGAATCACATGCACATAAAAC
AGATGAGGGAGTAGAATTCT

Product: integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MTENKRKGPLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSLKQARDRRDECRT
MVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSSSGLWSEGHADKIIQRLERDIFPWIGNIPISDINAPKLLSV
VRRIESRGALDTAHRALGNCGQIFRYAIATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKC
ALRLAPLVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQTGRDRYVFPSARDKKRPMSDN
AILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLAHAVRDPNGRAYNRTAHLPERKKMMQAWADYLDELK
LRKSEL

Sequences:

>Translated_406_residues
MTENKRKGPLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSLKQARDRRDECRT
MVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSSSGLWSEGHADKIIQRLERDIFPWIGNIPISDINAPKLLSV
VRRIESRGALDTAHRALGNCGQIFRYAIATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKC
ALRLAPLVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQTGRDRYVFPSARDKKRPMSDN
AILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLAHAVRDPNGRAYNRTAHLPERKKMMQAWADYLDELK
LRKSEL
>Mature_405_residues
TENKRKGPLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSLKQARDRRDECRTM
VANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSSSGLWSEGHADKIIQRLERDIFPWIGNIPISDINAPKLLSVV
RRIESRGALDTAHRALGNCGQIFRYAIATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKCA
LRLAPLVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQTGRDRYVFPSARDKKRPMSDNA
ILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLAHAVRDPNGRAYNRTAHLPERKKMMQAWADYLDELKL
RKSEL

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=388, Percent_Identity=37.1134020618557, Blast_Score=244, Evalue=9e-66,
Organism=Escherichia coli, GI1788974, Length=396, Percent_Identity=35.3535353535354, Blast_Score=237, Evalue=8e-64,
Organism=Escherichia coli, GI145693166, Length=397, Percent_Identity=36.272040302267, Blast_Score=234, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46774; Mature: 46643

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENKRKGPLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISL
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEE
GIYPDVSLKQARDRRDECRTMVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSS
ECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGLWSEGHADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNC
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
GQIFRYAIATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKC
HHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCEEECCCHHHHHHHHHHHHCCCCHHHHHH
ALRLAPLVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQT
HHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHCCCC
GRDRYVFPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDII
CCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
EHQLAHAVRDPNGRAYNRTAHLPERKKMMQAWADYLDELKLRKSEL
HHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TENKRKGPLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISL
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEE
GIYPDVSLKQARDRRDECRTMVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSS
ECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGLWSEGHADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNC
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
GQIFRYAIATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKC
HHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCEEECCCHHHHHHHHHHHHCCCCHHHHHH
ALRLAPLVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQT
HHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHCCCC
GRDRYVFPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDII
CCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
EHQLAHAVRDPNGRAYNRTAHLPERKKMMQAWADYLDELKLRKSEL
HHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]