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The map label for this gene is trbI [H]

Identifier: 148358315

GI number: 148358315

Start: 192026

End: 193267

Strand: Direct

Name: trbI [H]

Synonym: LPC_0177

Alternate gene names: 148358315

Gene position: 192026-193267 (Clockwise)

Preceding gene: 148358314

Following gene: 148358316

Centisome position: 5.37

GC content: 43.8

Gene sequence:

>1242_bases
ATGCATAAAAATAACGATTATTTATCACCTGATTCTTCACCGCAAAAGCTTCAAACCACGGGAGTTAAGCGTGTAAATAA
CATGCCTTTATTCATAGCCATTGGAGTTTTAACCGTTTTTGTCCTTCTGATAGCCTTCGTAGCACTTAAAAGAGCAAATG
CACAAAATCTGGTTACAGAACCTGCGAAGCTTACAACAGCGAAGAAAAATACCATGAGCTTGGCGTATGAGGTTATTGGC
AATCGCAAGCCAGAAACTAATCAACCGGTAGTGAATGCTCCAGAGCCTACACTGCCCGTTCCTCCGCCACAAAATACCCA
TGAAAACCAATCCCTGGACGCTCAAAGTGTACCAGACGCTGAAATGGAGCGCATTCGACAAGAAAAAACACAAGCTTTTG
AGGAAGCAGTCAACGCAAAAACATCCATCATGGTTGATAACGCACGATTAAATGCCAGAGAAATTACCAATGCATCAACG
ATAAATCATGACACGACAACCGAGGTGAATGTCGTGCTTAACTTCAAAGAACAACTTAATAAGCTACAAGCACGGCAAAA
CGCCAGGCCCATGCCGCAAACGTTAGGTGGCGAGGAAGGTGAAAGCCGATGGCATTTAAACTCAAGGCTTGAAAGCCCAA
ACAGTCGTTTCGAATTAAGGGCAGGCAGCGTTATTCCAGGGGTGATGGTGAGTGGCATTTCCTCCGAATTGCCAGGACAA
ATTATCGGTCAGGTTTCACAAAACGTTTACGATACGGCTACCGGTAAATATCTATTAATCCCGCAGGGCACTAAGGTTAT
TGGACTTTATTCCAGTGATGTGAGCTTTGGGCAAGATTCCGTTTTAGTAGCTTGGCAGCGCTTAGTGTTTCCAGATGGTA
AAGCATTAGATATTGGTTCTATGCCAGGAGCTGACAATGCGGGGTATGCTGGATTTCGCGATCAGGTGGATCATCACTAT
GCAAGAATTTATGGCTCAGCCCTTCTCATGTCTGGCATCGTCGCAGGGATTACCTACAGTCAGAATACAAACCAGACCAA
CCCCTATGGATACAATCAACCGACAGCGGGTAGTGTCTTAAGTCAGGCGTTGGGGCAACAGCTGGGTGAAGTGACATCAC
AGATGGTTTCAAAAAATTTAAATATCTCACCGACCATAAACATTCGGCCTGGTTACCGTTTCAATATTATTGTCATTAAA
GATTTAACTTTTAAAAGCCCTTATCGGCAATTTGCTTATTAA

Upstream 100 bases:

>100_bases
TCAGTCTATACATTGGCCCGCAAATATTAAGTCGAGCCTATGCAAACACCCGTGGAAAACTTGCGCCAATTAGCCCATGG
TCACACAAGGAATGACGCCA

Downstream 100 bases:

>100_bases
TACGGGGAAGATAATGAAACTCAGACTCATGCTTATTTTTTTATGGAGTGCGAACGCTTTTTCAAATGGTGCGCCGGTGT
TTGACTTTGCAAACTGGCTT

Product: conjugal transfer protein TrbI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MHKNNDYLSPDSSPQKLQTTGVKRVNNMPLFIAIGVLTVFVLLIAFVALKRANAQNLVTEPAKLTTAKKNTMSLAYEVIG
NRKPETNQPVVNAPEPTLPVPPPQNTHENQSLDAQSVPDAEMERIRQEKTQAFEEAVNAKTSIMVDNARLNAREITNAST
INHDTTTEVNVVLNFKEQLNKLQARQNARPMPQTLGGEEGESRWHLNSRLESPNSRFELRAGSVIPGVMVSGISSELPGQ
IIGQVSQNVYDTATGKYLLIPQGTKVIGLYSSDVSFGQDSVLVAWQRLVFPDGKALDIGSMPGADNAGYAGFRDQVDHHY
ARIYGSALLMSGIVAGITYSQNTNQTNPYGYNQPTAGSVLSQALGQQLGEVTSQMVSKNLNISPTINIRPGYRFNIIVIK
DLTFKSPYRQFAY

Sequences:

>Translated_413_residues
MHKNNDYLSPDSSPQKLQTTGVKRVNNMPLFIAIGVLTVFVLLIAFVALKRANAQNLVTEPAKLTTAKKNTMSLAYEVIG
NRKPETNQPVVNAPEPTLPVPPPQNTHENQSLDAQSVPDAEMERIRQEKTQAFEEAVNAKTSIMVDNARLNAREITNAST
INHDTTTEVNVVLNFKEQLNKLQARQNARPMPQTLGGEEGESRWHLNSRLESPNSRFELRAGSVIPGVMVSGISSELPGQ
IIGQVSQNVYDTATGKYLLIPQGTKVIGLYSSDVSFGQDSVLVAWQRLVFPDGKALDIGSMPGADNAGYAGFRDQVDHHY
ARIYGSALLMSGIVAGITYSQNTNQTNPYGYNQPTAGSVLSQALGQQLGEVTSQMVSKNLNISPTINIRPGYRFNIIVIK
DLTFKSPYRQFAY
>Mature_413_residues
MHKNNDYLSPDSSPQKLQTTGVKRVNNMPLFIAIGVLTVFVLLIAFVALKRANAQNLVTEPAKLTTAKKNTMSLAYEVIG
NRKPETNQPVVNAPEPTLPVPPPQNTHENQSLDAQSVPDAEMERIRQEKTQAFEEAVNAKTSIMVDNARLNAREITNAST
INHDTTTEVNVVLNFKEQLNKLQARQNARPMPQTLGGEEGESRWHLNSRLESPNSRFELRAGSVIPGVMVSGISSELPGQ
IIGQVSQNVYDTATGKYLLIPQGTKVIGLYSSDVSFGQDSVLVAWQRLVFPDGKALDIGSMPGADNAGYAGFRDQVDHHY
ARIYGSALLMSGIVAGITYSQNTNQTNPYGYNQPTAGSVLSQALGQQLGEVTSQMVSKNLNISPTINIRPGYRFNIIVIK
DLTFKSPYRQFAY

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45275; Mature: 45275

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKNNDYLSPDSSPQKLQTTGVKRVNNMPLFIAIGVLTVFVLLIAFVALKRANAQNLVTE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
PAKLTTAKKNTMSLAYEVIGNRKPETNQPVVNAPEPTLPVPPPQNTHENQSLDAQSVPDA
CHHHHHCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
EMERIRQEKTQAFEEAVNAKTSIMVDNARLNAREITNASTINHDTTTEVNVVLNFKEQLN
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECHHHHH
KLQARQNARPMPQTLGGEEGESRWHLNSRLESPNSRFELRAGSVIPGVMVSGISSELPGQ
HHHHHHCCCCCCHHCCCCCCCCEEEHHHHCCCCCCCEEEECCCCCCHHHHHCCCHHCCHH
IIGQVSQNVYDTATGKYLLIPQGTKVIGLYSSDVSFGQDSVLVAWQRLVFPDGKALDIGS
HHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCC
MPGADNAGYAGFRDQVDHHYARIYGSALLMSGIVAGITYSQNTNQTNPYGYNQPTAGSVL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHH
SQALGQQLGEVTSQMVSKNLNISPTINIRPGYRFNIIVIKDLTFKSPYRQFAY
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHCC
>Mature Secondary Structure
MHKNNDYLSPDSSPQKLQTTGVKRVNNMPLFIAIGVLTVFVLLIAFVALKRANAQNLVTE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
PAKLTTAKKNTMSLAYEVIGNRKPETNQPVVNAPEPTLPVPPPQNTHENQSLDAQSVPDA
CHHHHHCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
EMERIRQEKTQAFEEAVNAKTSIMVDNARLNAREITNASTINHDTTTEVNVVLNFKEQLN
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECHHHHH
KLQARQNARPMPQTLGGEEGESRWHLNSRLESPNSRFELRAGSVIPGVMVSGISSELPGQ
HHHHHHCCCCCCHHCCCCCCCCEEEHHHHCCCCCCCEEEECCCCCCHHHHHCCCHHCCHH
IIGQVSQNVYDTATGKYLLIPQGTKVIGLYSSDVSFGQDSVLVAWQRLVFPDGKALDIGS
HHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCC
MPGADNAGYAGFRDQVDHHYARIYGSALLMSGIVAGITYSQNTNQTNPYGYNQPTAGSVL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHH
SQALGQQLGEVTSQMVSKNLNISPTINIRPGYRFNIIVIKDLTFKSPYRQFAY
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]