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The map label for this gene is trbC [H]

Identifier: 148358309

GI number: 148358309

Start: 186788

End: 187165

Strand: Direct

Name: trbC [H]

Synonym: LPC_0171

Alternate gene names: 148358309

Gene position: 186788-187165 (Clockwise)

Preceding gene: 148358308

Following gene: 148358310

Centisome position: 5.22

GC content: 42.59

Gene sequence:

>378_bases
ATGACTCAGGTAAGCACCTTAAATTATAAAAAAATGTGGATGATGGGATTAGTGGTTCTGTTTTTATTATTTATTACCCA
TCCAGCAATGGCCTCGACTGCTGGCGGTGGTCTTCCTTTTGATTCATGGCTCACCAAAATACAAAAATCCATTACCGGCC
CGTTTGCTTTTAGTGCAGCCATCATTGGATTAGTTGCTGCAGGCGCCACGCTTATTTTTGGCGGCGATATGAATGGTTTT
ATGCGAACACTTGTCTTTTTTGTATTAGTGCTCTCATTTTTGGTAGCCGCGCAAAATACCATGACGGCCATTACCGGCAA
AGGTGCGGAAATATCTAAACCATCTACAGAAGTGAATGCAGCGGAGCATCAGTTATGA

Upstream 100 bases:

>100_bases
AAGAACGCCCGCGGGTCGCAGAATTGAAGAAATCATATCTATTCATGGCTTTGATAAAGGCCGGTATCGAATCGAAAAAC
TTGTTTGAAGGAGAGCATGA

Downstream 100 bases:

>100_bases
GCCTTCGCACCATCCCTATCCGAAAATGCGGTAACCGCCCTAACTTGTTTTTAGGCGGTGATCGCGAGCTGGTTATGTTT
TCAGGACTGTTGTCAGCCAT

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTQVSTLNYKKMWMMGLVVLFLLFITHPAMASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGDMNGF
MRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSTEVNAAEHQL

Sequences:

>Translated_125_residues
MTQVSTLNYKKMWMMGLVVLFLLFITHPAMASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGDMNGF
MRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSTEVNAAEHQL
>Mature_124_residues
TQVSTLNYKKMWMMGLVVLFLLFITHPAMASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGDMNGFM
RTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSTEVNAAEHQL

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007039 [H]

Pfam domain/function: PF04956 TrbC [H]

EC number: NA

Molecular weight: Translated: 13292; Mature: 13161

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVSTLNYKKMWMMGLVVLFLLFITHPAMASTAGGGLPFDSWLTKIQKSITGPFAFSAA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHH
IIGLVAAGATLIFGGDMNGFMRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSTEVNA
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
AEHQL
HHCCC
>Mature Secondary Structure 
TQVSTLNYKKMWMMGLVVLFLLFITHPAMASTAGGGLPFDSWLTKIQKSITGPFAFSAA
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHH
IIGLVAAGATLIFGGDMNGFMRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSTEVNA
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
AEHQL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]