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The map label for this gene is pal [H]

Identifier: 148284999

GI number: 148284999

Start: 1771365

End: 1771973

Strand: Direct

Name: pal [H]

Synonym: OTBS_1839

Alternate gene names: 148284999

Gene position: 1771365-1771973 (Clockwise)

Preceding gene: 148284997

Following gene: 148285001

Centisome position: 83.28

GC content: 32.18

Gene sequence:

>609_bases
ATGATTAAAAAGTCAATTATTAGCATATGTGTATTAGTGCTACTTTCTGGTTATAAGTGGAAATGTTTATGGCCAAGGTA
TAAACAGCGTAACTTTATTTCTCAAGTACTAGGAACTAAAGATTTCAAAGAAGATAACGATGATATAGCGGAAATTGTCT
CAAGTATTAATGCTGAAAGTAGCGATCAAGTAACAAGTAATAATGCACAACAAGAAGGATATGTTGATGTAAAGCATGAA
CAGTTTTTACAAGCTATACATAGAAAACATAAAGTATATTTTGCAACTGAAAAATTTGATCTCTCTGAAGAGAGCAAGAG
AGTTTTAAGAGCTCAAAGCGATTGGTTAAAAAATAATCCAGATGTCAAAATAATTATTGAAGGGCATTGTGATGAGCGTG
GAACTAGAGAATATAATCTTGCTCTTGGAAAAAAGAGGGCTGATTCTGTTAAGCAATTCTTAGTGACATTAGGTGTAAGC
AGAGACAAAATAGAAACTACTTCTTACGGAAAAGACAAGCCTGAAGTTGAAGTTACTAAAGATAATAAAGACGAAGCATA
TAGACTCAATCGTAGATCCGTCACAATTATTAAAAGTAATATAGCATAG

Upstream 100 bases:

>100_bases
ATAATAAAATTTTATTAATTTTGAGTTAATAGTAACTAAGTGTAAGATAGTTGTAGTACTACAATTACTACATTTTAAAT
ATTTTGATGGATAAGCAAGT

Downstream 100 bases:

>100_bases
AAGTAACTAAGAATAATCTTCTCACAGAAGAAGATTATTCTTCTTGAAGAGATATTCTTATATGTGTCATACATATTAAA
TATCTTGAAATAGGTGATAT

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MIKKSIISICVLVLLSGYKWKCLWPRYKQRNFISQVLGTKDFKEDNDDIAEIVSSINAESSDQVTSNNAQQEGYVDVKHE
QFLQAIHRKHKVYFATEKFDLSEESKRVLRAQSDWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADSVKQFLVTLGVS
RDKIETTSYGKDKPEVEVTKDNKDEAYRLNRRSVTIIKSNIA

Sequences:

>Translated_202_residues
MIKKSIISICVLVLLSGYKWKCLWPRYKQRNFISQVLGTKDFKEDNDDIAEIVSSINAESSDQVTSNNAQQEGYVDVKHE
QFLQAIHRKHKVYFATEKFDLSEESKRVLRAQSDWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADSVKQFLVTLGVS
RDKIETTSYGKDKPEVEVTKDNKDEAYRLNRRSVTIIKSNIA
>Mature_202_residues
MIKKSIISICVLVLLSGYKWKCLWPRYKQRNFISQVLGTKDFKEDNDDIAEIVSSINAESSDQVTSNNAQQEGYVDVKHE
QFLQAIHRKHKVYFATEKFDLSEESKRVLRAQSDWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADSVKQFLVTLGVS
RDKIETTSYGKDKPEVEVTKDNKDEAYRLNRRSVTIIKSNIA

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=105, Percent_Identity=44.7619047619048, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23315; Mature: 23315

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSIISICVLVLLSGYKWKCLWPRYKQRNFISQVLGTKDFKEDNDDIAEIVSSINAES
CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
SDQVTSNNAQQEGYVDVKHEQFLQAIHRKHKVYFATEKFDLSEESKRVLRAQSDWLKNNP
CCCCCCCCCCCCCCEECCHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
DVKIIIEGHCDERGTREYNLALGKKRADSVKQFLVTLGVSRDKIETTSYGKDKPEVEVTK
CEEEEEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC
DNKDEAYRLNRRSVTIIKSNIA
CCCCHHEEECCCEEEEEECCCC
>Mature Secondary Structure
MIKKSIISICVLVLLSGYKWKCLWPRYKQRNFISQVLGTKDFKEDNDDIAEIVSSINAES
CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
SDQVTSNNAQQEGYVDVKHEQFLQAIHRKHKVYFATEKFDLSEESKRVLRAQSDWLKNNP
CCCCCCCCCCCCCCEECCHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
DVKIIIEGHCDERGTREYNLALGKKRADSVKQFLVTLGVSRDKIETTSYGKDKPEVEVTK
CEEEEEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC
DNKDEAYRLNRRSVTIIKSNIA
CCCCHHEEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]