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The map label for this gene is sdhC [H]

Identifier: 148284919

GI number: 148284919

Start: 1650326

End: 1650676

Strand: Direct

Name: sdhC [H]

Synonym: OTBS_1696

Alternate gene names: 148284919

Gene position: 1650326-1650676 (Clockwise)

Preceding gene: 148284916

Following gene: 148284920

Centisome position: 77.59

GC content: 28.77

Gene sequence:

>351_bases
ATGTCACCACACATTACGATTTATCGTATGCAAATGAGTATGATATTATCAATTTTGCATCGCTTGAGTGGAATGGCAGT
TTTTGGTGGAGCTAGCATTATTACTTGGTGGTTAATTCTATGTGTATATAGTGATTTTGATAGGATTGTTGTTGATATAT
TCTATAACTTATGGTTTCAAGCATTAATATATCTAACTATATTTACTACTTGCTTTCATCTATGCACAGGTATTCGACAT
TTAATATGGGATACTGGATATGGTTTTTCTATTAAATACATTAATATTTCAGGTTGGATAGCAGTTGCTTTATCTATAAT
TGTATTCTATATGTGTATTAATAATTTTTAA

Upstream 100 bases:

>100_bases
AGGTTGTAGTAGTAGTTAAAGTGTACCTTTTATTATTAGTAATACTAACAAGTTTAATGGCATAAAATTGAATAAATTTA
ATAATTCACATACTCGTCCT

Downstream 100 bases:

>100_bases
TTTTAGTTTTCAGTGAATCAATGAATTAAAATGAAAGCACAAAATTTACAAAACAGTTTAAATACAATTAAGAGTCTAAG
TACTGATAAGTATTGTGTGC

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQALIYLTIFTTCFHLCTGIRH
LIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF

Sequences:

>Translated_116_residues
MSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQALIYLTIFTTCFHLCTGIRH
LIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF
>Mature_115_residues
SPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQALIYLTIFTTCFHLCTGIRHL
IWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13536; Mature: 13405

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQ
CCCCEEHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQ
CCCEEHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]