Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 148284859

GI number: 148284859

Start: 1546743

End: 1547231

Strand: Direct

Name: nusB [H]

Synonym: OTBS_1586

Alternate gene names: 148284859

Gene position: 1546743-1547231 (Clockwise)

Preceding gene: 148284858

Following gene: 148284861

Centisome position: 72.72

GC content: 25.77

Gene sequence:

>489_bases
TTGTTCTATTATATGATTAAGATTAATACTAAGACTATAACTAGAATTGCGAGCATTCAAGGAGTTTATAGTTACCAAAT
TTTAGACTCAGAGCCTACAATAGATTCTATAATAGATTTTATTATTACATATTATAAAGATAAAAGTTCTTTAGAAGATC
TTGAATTAGATTCTGCTATACCTTGCTTTAAGCTAAGGACAAATTATCTAACAAAGTTAGTGAATGAAACTATAGATAAC
TTAGAAACCATTGATATGATAATTTCCTCTTATCTTGCTGACAATTGGCAAATTAAAGACTTACATTTAATTTTACTATC
AATTTTACGTGTTGCTACTTGTGAATTAAAATTTTTTACTAGTACTCCATATAAAGTCGTGATCAATGAGTTTACAAATA
TAGCTAGTGATTTTGTTAAAGAAAGTGAAATTGGCTTTGTTAACTCTTTATTAGAAAAAATTAGTTTCAATGTACGAACA
AATTTCTAA

Upstream 100 bases:

>100_bases
GTTATAGAATCAAAGACTTAGATACTAGTAATGAATGTGTAATAATACATAATGAACTACTTAGCTATTTGCAAAATAAC
TGCTCTTAATATCAAATTGG

Downstream 100 bases:

>100_bases
ACTAAAGTGTCATAATATCCTATCATTTTACAAAAAGTAGTAGAATATTCATAGAGTAAGTATGATAGCTGGCCTTTCTA
ATTGACAGTTATTGCTTCTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MFYYMIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTNYLTKLVNETIDN
LETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRT
NF

Sequences:

>Translated_162_residues
MFYYMIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTNYLTKLVNETIDN
LETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRT
NF
>Mature_162_residues
MFYYMIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTNYLTKLVNETIDN
LETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRT
NF

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18801; Mature: 18801

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYYMIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAI
CEEEEEEECCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
PCFKLRTNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEC
STPYKVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRTNF
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFYYMIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAI
CEEEEEEECCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
PCFKLRTNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEC
STPYKVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRTNF
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA