| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
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The map label for this gene is rhp2
Identifier: 148284757
GI number: 148284757
Start: 1360018
End: 1362366
Strand: Direct
Name: rhp2
Synonym: OTBS_1402
Alternate gene names: NA
Gene position: 1360018-1362366 (Clockwise)
Preceding gene: 148284755
Following gene: 148284760
Centisome position: 63.94
GC content: 32.87
Gene sequence:
>2349_bases ATGCTGGAAAAACTTCCAGCAGTTAAGAAGTATATTCACAATATTCTTAAAAGTCATCGTTATTTTGAACCAGATTTTAC GCTTCTATTTGCTAAAACAGGTAATATCTATACAAGTATAGAATATGTTAAAATACTGATACAACATGGTACTATTTCAG CATCTAACATTTCTAGTCTCTTACATAATCATACAACAGCAACAGTAAAAATATTAGCACTGCTATTACCTAAATTAGCA GATTCTAGAGTAGAATGCCTAAAGAAATATGGTATCCCTTTTTCTAGCATTGTCAGTATTTTAAGAGATGAGTTACATAG TGATCTACTAAATAGTTTAGAAAAAATATTAGATACATTATGCATCCTAAGACCAGATGGCACTTATACAATATCAACTC AGTTAACAAAAATGTTAGAATGCTGTAAGTGTCAATTTTCTAGTATTACTGTTATCTTACGTGGAATGCCCCATAATACT AGCGATGCTTTAGAAAAGCTATTAAAGGTATTAGAAGGCCCTAGAATACAACAACTAAATGATCAGGGAATTCGATTTTC TAATATTAGTAGCATCTTAGCTGGAGCTGGTGCAGCTGGCCCACAAGCTTTAGAAAAGCTATTAAAGGTATTAGAAAGTT CTAGAATACAAGAACTAACTAAGCTTGGAATTCAATTTTCTAATATTAGTAGCATCTTAAATGGAGCTGGTGCAGCTGGC CCACAAGCTTTAGAAAAGCTATTAAAGGTATTAGAAAGTTCTAGAATACAAGAACTAACTAAGCTTGGAATTCAATTTTC TAATATTAGTCACATCTTAAATGGAGCTGGTGCAGCTGCAGCAGAAGCTTTAGAAAAGCTATTACAGATATTAGATAAAA AAGCACTTATGTTACTGCAGAAATATGAAATCAAATTTTCTAATTTTTGTACTATTTTAAGTAGTGCTAGAGCTAAGATA ACAGAGACTGTTCAAGAGGTATTAGAAATATTATCAGATCAGCAAATAAATAAGATCGGTAAGAAACAATTTTTTCAGAA TATTGCAAAATTTGCTAAAAGCGGCTCTAAGGCTCCGGCTATCTTCAAAAAATTTTTGTCATCATTATCATATGATGACA CTACACAACAAACAGAAGAAGATACTGATACTACTAATCAGCTTGAACAACAAGATGATGATATACAAGAATTGCCAAGT ACTTCAACGAAAGAGTCTAGTACTAATATTGAGATGATGGAATCTGTGGCTATATCTTCATCAGATTTAGAAGAAGGGCT TAAGTTAGTTACGGATGTTATAAGTCAAAATTGTGGATCTTCTTCTAGCATTACAGCAGATATAAGTCCTAATATTTACA TGGCAGAAGAAGAATATATTAATAGTATTATTCCAGATTTGGAGCAACAAAGTAGTAATATATTACCTGATCCTGATTAT TATACAGCTTATAATGAAGGCATGAAATTTGGACTAAACCATAGTTATGCAAGTATCTATGCCTCTATTGTTAGCAAGCA TATGGCTCATGGAATAACGGAACATTCTGCCAAATTTTTTGCTCAAAGCTATATTGAAGGTTTAAGTTTGTCTATTGAAA TTCATCAAAAGGGAGAATGTTATGCTCACAACTATGCTGAAGCTTACGCTGATTGTATAAGTAGTGGTAAACAACCAGAG TATGCTAAAAACTATGCTGAACTTTTTGCTGATGCTATAGCAAGTGGAAAAGATCCTGATTATGCTCGAAACTATGCTGA AGATAATGCAGATTTTATGTTTTTTGAACAATCTGAAGCTACTCAAGAGCATATTTTGGAGCAAATGAGTGCTAATGTTG ATAGTATTATTCCAGATTTGGAGCAACAAAGTAGTAATATATTATCTGATCCTAATGATGATTATTCTAGAGCTTATAAC GAAGGCATGCAATTTGGACTAAACCATAGTTATGCAAGTATCTATGCTTCTATTGTTAGCAAGCATATGGCTCATGGAAT AACGGAACATTCTGCCAAATTTTTTGCTCAAAGCTATATCGAAGGTTTTAGTTGGTCTATTGAAAATCATCAAAAGGGAG ATTGTCATGCTCGCAACTATGCTGAAGCTTACGCTGATTGCCTAAGTAGTGGTAAAAAACCAGAGTATGCTAAAAACTAT GCTGAACTTTTTGCTGATGCTATAGCAAGTGGAAAAGATCCTGATTATGCTCGAAACTATGCTGAAGATAATGCAGATTT TATGTTTTTTGAACAATCTGAAGCTACTCAAGAGCATATTTTGGAGCAAATGAGTGCTAATGTTGACCATACTGGAGGTG GTATTTTTAATAATAATGTTGAACAATAG
Upstream 100 bases:
>100_bases CTTACAAACGATTAATCACTTGAGACCTGAACAGCCTAAAATACTAACTAATACGTGTAATCTAGAAGAATATCTTAATC ATAATGCCGAAGTAAAAGAT
Downstream 100 bases:
>100_bases ATTAGCACTACCAACAAAGATATAATTTTCAATCTTAGCTTGATATAAGAAAAATAGCAATAGGAATAAGTATTAACCAG ATTATGTAACTGTTACTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ
Sequences:
>Translated_782_residues MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ >Mature_782_residues MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86738; Mature: 86738
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSL CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH LHNHTTATVKILALLLPKLADSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNTSDALEKLLKVLEGPRIQQLN HEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHCC DQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQ HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KYEIKFSNFCTILSSARAKITETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH IFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPSTSTKESSTNIEMMESVAISS HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCH SDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHHHHHHCCCHHHHCCCCCCCCCC YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGEC HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEECCCCH YAHNYAEAYADCISSGKQPEYAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHH TQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYNEGMQFGLNHSYASIYASIVS HHHHHHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH KHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNV HHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC EQ CC >Mature Secondary Structure MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSL CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH LHNHTTATVKILALLLPKLADSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNTSDALEKLLKVLEGPRIQQLN HEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHCC DQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQ HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KYEIKFSNFCTILSSARAKITETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH IFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPSTSTKESSTNIEMMESVAISS HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCH SDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHHHHHHCCCHHHHCCCCCCCCCC YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGEC HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEECCCCH YAHNYAEAYADCISSGKQPEYAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHH TQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYNEGMQFGLNHSYASIYASIVS HHHHHHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH KHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNV HHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC EQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA