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The map label for this gene is rarD [H]

Identifier: 148284101

GI number: 148284101

Start: 186178

End: 187050

Strand: Direct

Name: rarD [H]

Synonym: OTBS_0203

Alternate gene names: 148284101

Gene position: 186178-187050 (Clockwise)

Preceding gene: 148284095

Following gene: 148284102

Centisome position: 8.75

GC content: 27.95

Gene sequence:

>873_bases
ATGAATTCTGACTTACATAACTATTTGAAAGGAGTTTTTTGGTTTGTTCTGGCATTATTAAGTAGTGTGCTAAATGATAT
AATATCCAAAAAAATAGGCTTAAGTCTTAGCGCTGCTCAAATATCATTTCTGAGGTCTTTTGGAAGCACTTTAGCACTAA
TACCATTCATATTGTTTACTGGTATAAAAACTCTTAAGAGCAAAACATTAAAAATACATTTTCTAAGAGGAATATTATTA
TTTTGCTCTCTATCAACATGGGTATATGGGTTAACAATCACTTCTGTAGCATCAGTAACAATTATATCTTTTTCTATTCC
ATTAATTACATTAATTTTAGCTAATCTAGTACTCAACGAATATGTTAAATGGTATAGATGGGTTGCTACTATATTAGGAT
TTATAGGAGTAATAATTTCAATACCAACAACTAAAACAATATTTGATATTAGAATTTTAGTGCTGTTCTTATCAGCGTTT
ATTTTTGCTATACTTGATATTATTAATAAAAAATTTGTTAATAGCGAATCAATGCTATCAATGTTATTTTATTCTGCTTT
TTTCACGACTATTGTGGCATTACCATTTGCATATTACTCATGGAAACCTCTAAACTATACCTATTGGCCTTTAATTTTTA
TTTTAGGTTGTAGCGCTAATTTAATTCTCTATTTTCTTCTTAAAGCTTTTAGTTTAGTAGATAGTAGCGCTGTTGCTCCT
TACCGCTACATAGAACTAATACTTTCTGCTATAGCTGGATTTTTATATTTTAACGAAGCAGTAAGCTATTATATTTGGTT
TGGAGGAGCAATTTTAATTTTTTCAACTACTTTCATATTTTATACTGAAAAATCTAATATCAACAAACATTAA

Upstream 100 bases:

>100_bases
ATTTTTAGTACATTAATACAAAATGCTCATTTGTAAAAGCTAATTTTGATATATTAAAACTTAACAGGTAAAACATACAT
GCATTTGCAACTTAAGAATT

Downstream 100 bases:

>100_bases
AAATTATTAATTTTTAAATGCTAAACAAAAATTACAAAATTATTCTAAGTAGCTGTATTGCTAATATCTTTGAGTGGTAT
GATTATACGTTATTCATTCA

Product: putative permeases-like integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MNSDLHNYLKGVFWFVLALLSSVLNDIISKKIGLSLSAAQISFLRSFGSTLALIPFILFTGIKTLKSKTLKIHFLRGILL
FCSLSTWVYGLTITSVASVTIISFSIPLITLILANLVLNEYVKWYRWVATILGFIGVIISIPTTKTIFDIRILVLFLSAF
IFAILDIINKKFVNSESMLSMLFYSAFFTTIVALPFAYYSWKPLNYTYWPLIFILGCSANLILYFLLKAFSLVDSSAVAP
YRYIELILSAIAGFLYFNEAVSYYIWFGGAILIFSTTFIFYTEKSNINKH

Sequences:

>Translated_290_residues
MNSDLHNYLKGVFWFVLALLSSVLNDIISKKIGLSLSAAQISFLRSFGSTLALIPFILFTGIKTLKSKTLKIHFLRGILL
FCSLSTWVYGLTITSVASVTIISFSIPLITLILANLVLNEYVKWYRWVATILGFIGVIISIPTTKTIFDIRILVLFLSAF
IFAILDIINKKFVNSESMLSMLFYSAFFTTIVALPFAYYSWKPLNYTYWPLIFILGCSANLILYFLLKAFSLVDSSAVAP
YRYIELILSAIAGFLYFNEAVSYYIWFGGAILIFSTTFIFYTEKSNINKH
>Mature_290_residues
MNSDLHNYLKGVFWFVLALLSSVLNDIISKKIGLSLSAAQISFLRSFGSTLALIPFILFTGIKTLKSKTLKIHFLRGILL
FCSLSTWVYGLTITSVASVTIISFSIPLITLILANLVLNEYVKWYRWVATILGFIGVIISIPTTKTIFDIRILVLFLSAF
IFAILDIINKKFVNSESMLSMLFYSAFFTTIVALPFAYYSWKPLNYTYWPLIFILGCSANLILYFLLKAFSLVDSSAVAP
YRYIELILSAIAGFLYFNEAVSYYIWFGGAILIFSTTFIFYTEKSNINKH

Specific function: Transports S-adenosylmethionine [H]

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32872; Mature: 32872

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDLHNYLKGVFWFVLALLSSVLNDIISKKIGLSLSAAQISFLRSFGSTLALIPFILFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GIKTLKSKTLKIHFLRGILLFCSLSTWVYGLTITSVASVTIISFSIPLITLILANLVLNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVKWYRWVATILGFIGVIISIPTTKTIFDIRILVLFLSAFIFAILDIINKKFVNSESMLS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLFYSAFFTTIVALPFAYYSWKPLNYTYWPLIFILGCSANLILYFLLKAFSLVDSSAVAP
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCH
YRYIELILSAIAGFLYFNEAVSYYIWFGGAILIFSTTFIFYTEKSNINKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCC
>Mature Secondary Structure
MNSDLHNYLKGVFWFVLALLSSVLNDIISKKIGLSLSAAQISFLRSFGSTLALIPFILFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GIKTLKSKTLKIHFLRGILLFCSLSTWVYGLTITSVASVTIISFSIPLITLILANLVLNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVKWYRWVATILGFIGVIISIPTTKTIFDIRILVLFLSAFIFAILDIINKKFVNSESMLS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLFYSAFFTTIVALPFAYYSWKPLNYTYWPLIFILGCSANLILYFLLKAFSLVDSSAVAP
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCH
YRYIELILSAIAGFLYFNEAVSYYIWFGGAILIFSTTFIFYTEKSNINKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA