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The map label for this gene is virD4 [H]

Identifier: 148284004

GI number: 148284004

Start: 6617

End: 8389

Strand: Direct

Name: virD4 [H]

Synonym: OTBS_0007

Alternate gene names: 148284004

Gene position: 6617-8389 (Clockwise)

Preceding gene: 148284003

Following gene: 148284005

Centisome position: 0.31

GC content: 30.74

Gene sequence:

>1773_bases
ATGAATGAGAATGCATTTTTAACTAAGATTAGAAATCTAGTTATAAAGATAATGGTTCATTGTATTGGAGTAATATTAGT
AGTTTTCATTATTAAATTTTTTATACTCTTATTTACTGTTAAACATCAAAATTTAATAGATGTATTACTAACTTTTAATG
TATCCATTGTATATCAATATCTAATCTGGATTATAAATTCTTGGAGTTTAATTGATTTTAGTAGTTATGATTACTTAAAA
CTTAAATTAGTATTTTCATTTATAGTTCCACCTGTTATAACTATAGTGTTATATATCAAAAATTTCGAGAAAATTAAGAG
TTGGCAACCATATAAATTGAAAGAAAAAGTATACGGTGATGCACGTTGGGGAGATCAAGATGATATAAAAAGAGCTGGTC
TTAGATCAAAGCATGGTACATTGTTAGGTGTGGATAAGGGAGGATACTATGTTGCAGATGGATTTCAACATGCTTTATTA
TTTGCTCCTACTGGTTCAGGTAAAGGGGTAGGTTTTGTAATTCCAAATTTATTGTTTTGGGAACATTCGGTAATAGTTCA
CGATATTAAGCTTGAAAATTATGAATTAACTAGTGGCTGGCGAGCTCAGCAAGGACAAAATGTTTATGTATGGGAGCCAG
CTAATCCAGATGGTATTACTCATTGTTATAATCCAATAGATTGGGTTAGTAGTAAACCTGGGCAGATGGTTGATGATGTG
CAGAAAATTGCTAACCTAATTATGCCAGAAAAAGACTTTTGGAATAATGAGGCTAGAAGTCTGTTTTTAGGAGTTGTATT
ATATTTAATTGCTGACAATACAAAAGCTAAAACATTTGGTGAAGTGGTCCGTACTATGCGCAGTAATGATGTAGTATATA
ATTTAGCAGTAGTATTGGATACTATGGGAGCAGTTATTCATCCAGTTGCTTATATGAATATTGCTGCTTTTCTTCAAAAA
GCTGATAAAGAACGCTCTGGAGTAATATCAACTATGAATTCTGGGCTTGAATTATGGGCAAATCCATTAATTGATGCTGC
AACTGCTTCATCAGATTTCAATATCTTAGAAATAAAAAGAAAAAAAACAACAATATATGTTGGCTTAACACCTGATAATA
TCAATAGATTGCAAAAATTAATGCAAGTATTTTATCAACAGTCTACTGAATTTTTAAGCAGAAAAATTCCTGATGTTAAG
GAAGAACCTTATGGGGTAATGTTTCTATTGGATGAGTTTCCAACTTTAGGTAAAATGGAACAATTTAAAACCGGAATTGC
TTATTTTCGAGGTTATAGAGTAAGGTTATTTTTGATTATTCAAGATACGCAACAGTTAAAAGGAACATATGAAGAAGCAG
GAATGAATTCATTTTTATCTAATTCTACTTATAGAATTACCTTTGCTGCTAACAATTATGAGACTGCTAACTTGATATCA
CAGCTATGTGGTAATAAAACAGTAAAACAAGCATCTCATAGTCAACCTCGCTTTTTTGATCTTAATCCAGCTACTAGAAC
TATGAATATTTCTGAAGTACAAAGAGCATTATTATTACCACAAGAAGTTATTTTACTGCCACGAGATGAGCAAATTATTT
TAATTGAATCGTTTCCACCAATACGATCTAAAAAGGTTAAATATTATGAGGACAAGTTTTTTACTACTAGATTACTACCA
CCTTCATTTGTTCCAACTCAAACACCTTATGTTCCTCCAGATTATAATGCTACAGCTGATGATAGTAATAACGTAGATAA
TAATCAAAAATAA

Upstream 100 bases:

>100_bases
ATATTAATGCAGTAATTGATATAGTAGTGCAATTGAAGCGTGGTGATCGTGGAATTAGATATATTTCTGAAATATATTTT
AAAAAAATGAGAAAAAAATA

Downstream 100 bases:

>100_bases
GTAAAGTAATAAGAGAGTTTATCTAAGAACTATTTTATTTACTATAGTCATCTACAATGAGGTTTTGAGCATAGAAAAAA
GTGATAATAGATTCTAAAAT

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQYLIWIINSWSLIDFSSYDYLK
LKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGDARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALL
FAPTGSGKGVGFVIPNLLFWEHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDV
QKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLDTMGAVIHPVAYMNIAAFLQK
ADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKRKKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVK
EEPYGVMFLLDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLIS
QLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPPIRSKKVKYYEDKFFTTRLLP
PSFVPTQTPYVPPDYNATADDSNNVDNNQK

Sequences:

>Translated_590_residues
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQYLIWIINSWSLIDFSSYDYLK
LKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGDARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALL
FAPTGSGKGVGFVIPNLLFWEHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDV
QKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLDTMGAVIHPVAYMNIAAFLQK
ADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKRKKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVK
EEPYGVMFLLDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLIS
QLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPPIRSKKVKYYEDKFFTTRLLP
PSFVPTQTPYVPPDYNATADDSNNVDNNQK
>Mature_590_residues
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQYLIWIINSWSLIDFSSYDYLK
LKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGDARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALL
FAPTGSGKGVGFVIPNLLFWEHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDV
QKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLDTMGAVIHPVAYMNIAAFLQK
ADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKRKKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVK
EEPYGVMFLLDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLIS
QLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPPIRSKKVKYYEDKFFTTRLLP
PSFVPTQTPYVPPDYNATADDSNNVDNNQK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 67493; Mature: 67493

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LIWIINSWSLIDFSSYDYLKLKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGD
HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
ARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALLFAPTGSGKGVGFVIPNLLFW
CCCCCHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEEEECCCCCCEEEECCCHHHC
EHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDV
CCCEEEEEEEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHH
QKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLD
HHHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEHHHHHHH
TMGAVIHPVAYMNIAAFLQKADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEE
KKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVKEEPYGVMFLLDEFPTLGKME
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHH
QFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLIS
HHHHHHHHHCCCEEEEEEEEECCHHHCCCHHHHCHHHHHCCCEEEEEEEECCCCHHHHHH
QLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPP
HHHCCCHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCHHEEEECCCCCEEEEECCCC
IRSKKVKYYEDKFFTTRLLPPSFVPTQTPYVPPDYNATADDSNNVDNNQK
CCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LIWIINSWSLIDFSSYDYLKLKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGD
HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
ARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALLFAPTGSGKGVGFVIPNLLFW
CCCCCHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEEEECCCCCCEEEECCCHHHC
EHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDV
CCCEEEEEEEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHH
QKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLD
HHHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEHHHHHHH
TMGAVIHPVAYMNIAAFLQKADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEE
KKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVKEEPYGVMFLLDEFPTLGKME
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHH
QFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLIS
HHHHHHHHHCCCEEEEEEEEECCHHHCCCHHHHCHHHHHCCCEEEEEEEECCCCHHHHHH
QLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPP
HHHCCCHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCHHEEEECCCCCEEEEECCCC
IRSKKVKYYEDKFFTTRLLPPSFVPTQTPYVPPDYNATADDSNNVDNNQK
CCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]