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The map label for this gene is rimM

Identifier: 148261143

GI number: 148261143

Start: 2376513

End: 2377022

Strand: Reverse

Name: rimM

Synonym: Acry_2152

Alternate gene names: 148261143

Gene position: 2377022-2376513 (Counterclockwise)

Preceding gene: 148261144

Following gene: 148261142

Centisome position: 70.13

GC content: 73.14

Gene sequence:

>510_bases
ATGGATGATCGCCTGATCCTGATGGGCGTGATCGGCCGGCCCCACGGTGTGCGCGGGGCCGTGCATGTCACCACCTATTC
GCCGGACCCGGAGGGGCTGGCCGAGCTGCCGTTGCGCGACGAGCGCGGCCGGCGGGTCGGGCTGGCCTGGACCGGGGCGG
GGATCGCGCGCGTCACCATCGGCGAGGGCGACGAGGCCGCCGCGATCGCCGACCGCGATGCGGCGGCGAAGCTGACCAAT
CTCCGGCTCTATGTGCGCCGGGCCGACCTGCCGCCGCCCGAGGACGAGGACGAATTCTACTTCGCCGACCTCATCGGGCT
GCACGCGGTGGGGCCGGATGGGGCGGCACTCGGCACGATCCGCGCGGTGCATGATTTCGGCGCCGGCGCGAGCATCGAAC
TCTCCGACGGCTCGCTGCTGCCCTTCACCCGCGCGGTGGTGCCGGAGATCGACCTGCCGGGCGGCCGCGCCGTGGTGGTG
CGGCCGGTCGAGGTGGAGATGCGGGAATGA

Upstream 100 bases:

>100_bases
GTTCCGCGAGCAGCCCGTGCAGTCCGCGCCGAAGAAGAAGGCGCAGGAGCGCGCCGCCGAGCGCGCCAAGGCCGCCGAGG
CCTGATTTCGCGGCTGAGCG

Downstream 100 bases:

>100_bases
GCTTCCGCGCCACGATCATCACCCTGTTCCCCGAGATGTTTCCGGGGCCGCTCGGCCAGTCGCTGGCCGGACGCGCGCTG
GAGACGGGCATCTGGGCGCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDDRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTGAGIARVTIGEGDEAAAIADRDAAAKLTN
LRLYVRRADLPPPEDEDEFYFADLIGLHAVGPDGAALGTIRAVHDFGAGASIELSDGSLLPFTRAVVPEIDLPGGRAVVV
RPVEVEMRE

Sequences:

>Translated_169_residues
MDDRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTGAGIARVTIGEGDEAAAIADRDAAAKLTN
LRLYVRRADLPPPEDEDEFYFADLIGLHAVGPDGAALGTIRAVHDFGAGASIELSDGSLLPFTRAVVPEIDLPGGRAVVV
RPVEVEMRE
>Mature_169_residues
MDDRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTGAGIARVTIGEGDEAAAIADRDAAAKLTN
LRLYVRRADLPPPEDEDEFYFADLIGLHAVGPDGAALGTIRAVHDFGAGASIELSDGSLLPFTRAVVPEIDLPGGRAVVV
RPVEVEMRE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ACICJ (A5G0G9)

Other databases:

- EMBL:   CP000697
- RefSeq:   YP_001235270.1
- ProteinModelPortal:   A5G0G9
- SMR:   A5G0G9
- STRING:   A5G0G9
- GeneID:   5162512
- GenomeReviews:   CP000697_GR
- KEGG:   acr:Acry_2152
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- BioCyc:   ACRY349163:ACRY_2152-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17982; Mature: 17982

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTGAGIARVTI
CCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCEEEEEEECCCEEEEEE
GEGDEAAAIADRDAAAKLTNLRLYVRRADLPPPEDEDEFYFADLIGLHAVGPDGAALGTI
CCCCCEEEEECCCCHHEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEE
RAVHDFGAGASIELSDGSLLPFTRAVVPEIDLPGGRAVVVRPVEVEMRE
EEEHHCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MDDRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTGAGIARVTI
CCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCEEEEEEECCCEEEEEE
GEGDEAAAIADRDAAAKLTNLRLYVRRADLPPPEDEDEFYFADLIGLHAVGPDGAALGTI
CCCCCEEEEECCCCHHEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEE
RAVHDFGAGASIELSDGSLLPFTRAVVPEIDLPGGRAVVVRPVEVEMRE
EEEHHCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA