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The map label for this gene is lsrR [H]

Identifier: 148260658

GI number: 148260658

Start: 1832575

End: 1833612

Strand: Reverse

Name: lsrR [H]

Synonym: Acry_1661

Alternate gene names: 148260658

Gene position: 1833612-1832575 (Counterclockwise)

Preceding gene: 148260659

Following gene: 148260657

Centisome position: 54.1

GC content: 72.16

Gene sequence:

>1038_bases
GTGGTCACAGATCGAGGCGACCGGCCATCCGGCGACGATACCGAACTCGTCACCCGGGTGGCGTGGCTCTACTACGAGGC
ATCCCTGACCCAGGCGGAGATCAGCGCGCAGCTTCGCATTCCGCCGGCGCGCGTGCAGCGGCTGATCGCCGGCGCCGCGC
GCAGCGGCCTCGTGCGGATCCTCATCGAGGGTGATCTCGCCGGCTGCCTCGGCCTGGAGCGGACGCTGATCGAGCGCCAT
GGCCTGACCTATTGCCGGGTCGTTCCCGCGCTGCCCGACGCTCCGGCCGCGGCGGGCGGCGCCGCATCGTCCCGCGTCAT
TTCCTCGCTCGGCCGCGCGGCGGCGGCGTTTCTTCATGAAACCTTCGCCCGCGGCCAGCATCGTGTCGTCGGGTTCGGGC
ATGGCCGCACCATGGCCGCGACGGTCGAACACCTGCCGCGCGAGCCGCGGGAGGGGCTGAAGGTCGTCTCCATCATCGGC
GCGCTCGCGCAGCGGATCGACGCCAACCCGTTCGACGTGATCCACGCGCTGGCGGAAAAGACCGCGGCGGCGGCCTATCT
GCCGCCGGTGCCGTTCTATGCCCAGTCGCGCGCCGATCGCCGGGTGCTGCTGCGCCAGCGCGGCGTGGCCGAGGCGTTCG
CCGTGGCGGCGGAGGCCAGTCTCTATGTCATGGGCATCGGCGAGATCGGGCGGACGGCGTCGCTCTGCCAGACCGGCATG
CTGCTGCCCGAGGAACTGGAACAGGCGCGGCGCGACGGCGCGGTGGCCGAGGCGCTGGGCTCGTTCTTCGACGCCGGGGG
GCGGCGCATCCGCACCGAACTGCATGACCGGCTGATCGGCATCGATCTCGCCGAAAGCGGCGATCGCGAGGTCGTCGCCG
TGGCGGGCGGGATGGAGAAGCAGGCCGCGATTGCCGCGATGCTGCGCGGCCGGCTGATCACCGGGCTGATCACCGACGAG
CGGACCGCTTCGTCCCTGGTGGCGGACAACGACGACGACGCGGCGCGTGGCGCGTCCCGCAGGGTGGCGAAGGCGTGA

Upstream 100 bases:

>100_bases
CGATGAGGCCGCCGGCGCGGCGCGCCCGGTCTTGACGCTGCCGCCGCAAGTATGATTATTTTTTTATCGATAGCAGAAAT
AATCAATCTCAGGCGGGAAC

Downstream 100 bases:

>100_bases
CGCGCCGGCGATTCGCGCGCGCGAGACAGGGAGAACCGCCGTGGAGGCCGTGATCGGGCTTGACTGCAGCACCAGCGCGG
TCAAGGCGCTGGCCTTCGAC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MVTDRGDRPSGDDTELVTRVAWLYYEASLTQAEISAQLRIPPARVQRLIAGAARSGLVRILIEGDLAGCLGLERTLIERH
GLTYCRVVPALPDAPAAAGGAASSRVISSLGRAAAAFLHETFARGQHRVVGFGHGRTMAATVEHLPREPREGLKVVSIIG
ALAQRIDANPFDVIHALAEKTAAAAYLPPVPFYAQSRADRRVLLRQRGVAEAFAVAAEASLYVMGIGEIGRTASLCQTGM
LLPEELEQARRDGAVAEALGSFFDAGGRRIRTELHDRLIGIDLAESGDREVVAVAGGMEKQAAIAAMLRGRLITGLITDE
RTASSLVADNDDDAARGASRRVAKA

Sequences:

>Translated_345_residues
MVTDRGDRPSGDDTELVTRVAWLYYEASLTQAEISAQLRIPPARVQRLIAGAARSGLVRILIEGDLAGCLGLERTLIERH
GLTYCRVVPALPDAPAAAGGAASSRVISSLGRAAAAFLHETFARGQHRVVGFGHGRTMAATVEHLPREPREGLKVVSIIG
ALAQRIDANPFDVIHALAEKTAAAAYLPPVPFYAQSRADRRVLLRQRGVAEAFAVAAEASLYVMGIGEIGRTASLCQTGM
LLPEELEQARRDGAVAEALGSFFDAGGRRIRTELHDRLIGIDLAESGDREVVAVAGGMEKQAAIAAMLRGRLITGLITDE
RTASSLVADNDDDAARGASRRVAKA
>Mature_345_residues
MVTDRGDRPSGDDTELVTRVAWLYYEASLTQAEISAQLRIPPARVQRLIAGAARSGLVRILIEGDLAGCLGLERTLIERH
GLTYCRVVPALPDAPAAAGGAASSRVISSLGRAAAAFLHETFARGQHRVVGFGHGRTMAATVEHLPREPREGLKVVSIIG
ALAQRIDANPFDVIHALAEKTAAAAYLPPVPFYAQSRADRRVLLRQRGVAEAFAVAAEASLYVMGIGEIGRTASLCQTGM
LLPEELEQARRDGAVAEALGSFFDAGGRRIRTELHDRLIGIDLAESGDREVVAVAGGMEKQAAIAAMLRGRLITGLITDE
RTASSLVADNDDDAARGASRRVAKA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=323, Percent_Identity=31.5789473684211, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=24.6006389776358, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36628; Mature: 36628

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTDRGDRPSGDDTELVTRVAWLYYEASLTQAEISAQLRIPPARVQRLIAGAARSGLVRI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCEEEE
LIEGDLAGCLGLERTLIERHGLTYCRVVPALPDAPAAAGGAASSRVISSLGRAAAAFLHE
EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TFARGQHRVVGFGHGRTMAATVEHLPREPREGLKVVSIIGALAQRIDANPFDVIHALAEK
HHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TAAAAYLPPVPFYAQSRADRRVLLRQRGVAEAFAVAAEASLYVMGIGEIGRTASLCQTGM
HHHHHCCCCCCCHHHCCHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHCC
LLPEELEQARRDGAVAEALGSFFDAGGRRIRTELHDRLIGIDLAESGDREVVAVAGGMEK
CCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEECCCCCCEEEEEECCCHH
QAAIAAMLRGRLITGLITDERTASSLVADNDDDAARGASRRVAKA
HHHHHHHHHHHHHEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVTDRGDRPSGDDTELVTRVAWLYYEASLTQAEISAQLRIPPARVQRLIAGAARSGLVRI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCEEEE
LIEGDLAGCLGLERTLIERHGLTYCRVVPALPDAPAAAGGAASSRVISSLGRAAAAFLHE
EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TFARGQHRVVGFGHGRTMAATVEHLPREPREGLKVVSIIGALAQRIDANPFDVIHALAEK
HHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TAAAAYLPPVPFYAQSRADRRVLLRQRGVAEAFAVAAEASLYVMGIGEIGRTASLCQTGM
HHHHHCCCCCCCHHHCCHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHCC
LLPEELEQARRDGAVAEALGSFFDAGGRRIRTELHDRLIGIDLAESGDREVVAVAGGMEK
CCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEECCCCCCEEEEEECCCHH
QAAIAAMLRGRLITGLITDERTASSLVADNDDDAARGASRRVAKA
HHHHHHHHHHHHHEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA