BacMap

Definition	Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession	NC_009484
Length	3,389,227

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The map label for this gene is rbsA [H]

Identifier: 148260598

GI number: 148260598

Start: 1767512

End: 1768294

Strand: Reverse

Name: rbsA [H]

Synonym: Acry_1600

Alternate gene names: 148260598

Gene position: 1768294-1767512 (Counterclockwise)

Preceding gene: 148260599

Following gene: 148260595

Centisome position: 52.17

GC content: 70.75

Gene sequence:

>783_bases
ATGGCCGAGCCGATCCTGAGCCTGCACGGCATCGCCAAGCATTACGGCCCGGTGCGGGCGCTCGACGCGGTGGATTTCGA
GGTCGCGGCCGGCGAGATCGTCTCGCTGGTCGGCGACAACGGGGCCGGCAAGTCGACCATGGTCAAGATCATGTCGGGCG
CGGTGCGGCCGAGTGCCGGGGAGATCCGCTTCGCCGGGCGGGCGGTGAGCTTCGCCTCGCCGCACGACGCGCGGGAGGCG
GGGATCGAGACCGTGTACCAGGACCTGGCGGTGGTGCCGGAACTCGACGCCGAGGCGAACCTGTTCCTCGGCCGGGAATG
GACCGGCAGCGGGCCGATCTCGCGCTTCTTCCTCGACAAGAGGCGGATGCGGCGGGCGGCGGAGGAGCATATCGCCTCGC
TGAAGGTGAACCTGAAATCGACGCGCCAGCCGGTCGGCCTGCTGTCGGGCGGGCAGCGGCAGAGTGTGGCGGTGGCGCGC
GCGATCCTGTGGGGGCGGAAGGTCGTCATCCTCGACGAGCCGACCGCGGCCCTCGGGGTGCGGGAGTCGCGCGGGGTGCT
CGACCTCGTGCTGGAACTGCGGGCGCGGGGCTTCGGCGTGGTGATGGTCAGCCATTCGATGCCGCATATCTTCGAGGTGT
CGGACCGGATCTTCGTGCTGCGGCACGGGCGGCGGGCCGGGTTCGTCGAGCGGGCGGCGGTGACGATGAACGACGTGGTG
GGGATGATCACCGGCGTCGCCGTCTCGGAGAGCATGACGGTGCGGGAGGCGGGGCACTCGTAA

Upstream 100 bases:

>100_bases
AACGCGGCGCACTGGGTGAAGCTGTGGGACGAGGCGAAGACGCCGGCCGGGGCGGCGAAGGCGTTCCGGGAGGCGCCGAT
CGGCTGCATGGGCTGAGGCG

Downstream 100 bases:

>100_bases
GGCCTGTCGCCGCAGCGGCGCTCAGGAGAGGAACGGGAACGGGCCCGGATAGGAATCGACGAAGACCATCTGCGAGGTGA
AGGACGCGCCGTCCCAGCGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAEPILSLHGIAKHYGPVRALDAVDFEVAAGEIVSLVGDNGAGKSTMVKIMSGAVRPSAGEIRFAGRAVSFASPHDAREA
GIETVYQDLAVVPELDAEANLFLGREWTGSGPISRFFLDKRRMRRAAEEHIASLKVNLKSTRQPVGLLSGGQRQSVAVAR
AILWGRKVVILDEPTAALGVRESRGVLDLVLELRARGFGVVMVSHSMPHIFEVSDRIFVLRHGRRAGFVERAAVTMNDVV
GMITGVAVSESMTVREAGHS

Sequences:

>Translated_260_residues
MAEPILSLHGIAKHYGPVRALDAVDFEVAAGEIVSLVGDNGAGKSTMVKIMSGAVRPSAGEIRFAGRAVSFASPHDAREA
GIETVYQDLAVVPELDAEANLFLGREWTGSGPISRFFLDKRRMRRAAEEHIASLKVNLKSTRQPVGLLSGGQRQSVAVAR
AILWGRKVVILDEPTAALGVRESRGVLDLVLELRARGFGVVMVSHSMPHIFEVSDRIFVLRHGRRAGFVERAAVTMNDVV
GMITGVAVSESMTVREAGHS
>Mature_259_residues
AEPILSLHGIAKHYGPVRALDAVDFEVAAGEIVSLVGDNGAGKSTMVKIMSGAVRPSAGEIRFAGRAVSFASPHDAREAG
IETVYQDLAVVPELDAEANLFLGREWTGSGPISRFFLDKRRMRRAAEEHIASLKVNLKSTRQPVGLLSGGQRQSVAVARA
ILWGRKVVILDEPTAALGVRESRGVLDLVLELRARGFGVVMVSHSMPHIFEVSDRIFVLRHGRRAGFVERAAVTMNDVVG
MITGVAVSESMTVREAGHS

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=231, Percent_Identity=29.004329004329, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI27881501, Length=222, Percent_Identity=29.7297297297297, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI30795238, Length=222, Percent_Identity=29.7297297297297, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI45446740, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI47078218, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI105990541, Length=228, Percent_Identity=28.9473684210526, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI153792144, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI150417984, Length=223, Percent_Identity=28.6995515695067, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=23.5555555555556, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI42741659, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI9961250, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4505771, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI9961252, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI6005701, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI66529005, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI42490749, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI48995001, Length=243, Percent_Identity=38.6831275720165, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1790190, Length=244, Percent_Identity=36.8852459016393, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1788472, Length=254, Percent_Identity=33.8582677165354, Blast_Score=159, Evalue=1e-40,
Organism=Escherichia coli, GI1789991, Length=244, Percent_Identity=35.2459016393443, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=35.8744394618834, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=34.8178137651822, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788897, Length=249, Percent_Identity=34.5381526104418, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787792, Length=255, Percent_Identity=29.4117647058824, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=30.4545454545455, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789864, Length=231, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=30.6306306306306, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=28.448275862069, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=28.8888888888889, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=29.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787105, Length=254, Percent_Identity=28.740157480315, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=30.5439330543933, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=27.6018099547511, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789962, Length=240, Percent_Identity=30.4166666666667, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=28.0851063829787, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI48994997, Length=242, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=27.8761061946903, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=27.9661016949153, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=224, Percent_Identity=27.2321428571429, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=29.2792792792793, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787758, Length=209, Percent_Identity=29.6650717703349, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=29.2792792792793, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=28.8888888888889, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=26.027397260274, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=28.9592760180996, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=27.5700934579439, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786698, Length=222, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=27.4774774774775, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789593, Length=218, Percent_Identity=28.4403669724771, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=25.7918552036199, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786703, Length=231, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786803, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=29.646017699115, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788506, Length=246, Percent_Identity=28.8617886178862, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788644, Length=237, Percent_Identity=27.0042194092827, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790739, Length=215, Percent_Identity=26.9767441860465, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=29.004329004329, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788540, Length=206, Percent_Identity=29.126213592233, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789032, Length=200, Percent_Identity=26.5, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081782, Length=226, Percent_Identity=28.3185840707965, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787759, Length=239, Percent_Identity=29.7071129707113, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787143, Length=229, Percent_Identity=30.5676855895196, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI48994883, Length=227, Percent_Identity=27.3127753303965, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786981, Length=213, Percent_Identity=29.5774647887324, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788053, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786654, Length=210, Percent_Identity=29.5238095238095, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786253, Length=214, Percent_Identity=28.0373831775701, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789891, Length=237, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI48994943, Length=203, Percent_Identity=26.6009852216749, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790534, Length=208, Percent_Identity=27.4038461538462, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787112, Length=199, Percent_Identity=30.1507537688442, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=218, Percent_Identity=25.2293577981651, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=227, Percent_Identity=27.7533039647577, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=210, Percent_Identity=28.0952380952381, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=210, Percent_Identity=28.0952380952381, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=210, Percent_Identity=28.0952380952381, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=207, Percent_Identity=29.951690821256, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=214, Percent_Identity=29.9065420560748, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=210, Percent_Identity=30.4761904761905, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=211, Percent_Identity=29.3838862559242, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=228, Percent_Identity=29.3859649122807, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=224, Percent_Identity=25.8928571428571, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=209, Percent_Identity=29.6650717703349, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=212, Percent_Identity=28.7735849056604, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=234, Percent_Identity=25.2136752136752, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=210, Percent_Identity=28.0952380952381, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6320339, Length=215, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=213, Percent_Identity=27.6995305164319, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221500365, Length=222, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI116007184, Length=222, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=27.1929824561404, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574150, Length=225, Percent_Identity=28.4444444444444, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI116007328, Length=225, Percent_Identity=28.4444444444444, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221512771, Length=223, Percent_Identity=26.0089686098655, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24666092, Length=221, Percent_Identity=24.4343891402715, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571209, Length=232, Percent_Identity=25.8620689655172, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17136662, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357907, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24659289, Length=214, Percent_Identity=28.0373831775701, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19920532, Length=198, Percent_Identity=26.7676767676768, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580930, Length=198, Percent_Identity=26.7676767676768, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585091, Length=210, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 27959; Mature: 27827

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPILSLHGIAKHYGPVRALDAVDFEVAAGEIVSLVGDNGAGKSTMVKIMSGAVRPSAG
CCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCCC
EIRFAGRAVSFASPHDAREAGIETVYQDLAVVPELDAEANLFLGREWTGSGPISRFFLDK
CEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH
RRMRRAAEEHIASLKVNLKSTRQPVGLLSGGQRQSVAVARAILWGRKVVILDEPTAALGV
HHHHHHHHHHHHHEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHCC
RESRGVLDLVLELRARGFGVVMVSHSMPHIFEVSDRIFVLRHGRRAGFVERAAVTMNDVV
CCCCCHHHHHHHHHHCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHH
GMITGVAVSESMTVREAGHS
HHHHHHHHCCCEEHHCCCCC
>Mature Secondary Structure 
AEPILSLHGIAKHYGPVRALDAVDFEVAAGEIVSLVGDNGAGKSTMVKIMSGAVRPSAG
CCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCCC
EIRFAGRAVSFASPHDAREAGIETVYQDLAVVPELDAEANLFLGREWTGSGPISRFFLDK
CEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH
RRMRRAAEEHIASLKVNLKSTRQPVGLLSGGQRQSVAVARAILWGRKVVILDEPTAALGV
HHHHHHHHHHHHHEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHCC
RESRGVLDLVLELRARGFGVVMVSHSMPHIFEVSDRIFVLRHGRRAGFVERAAVTMNDVV
CCCCCHHHHHHHHHHCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHH
GMITGVAVSESMTVREAGHS
HHHHHHHHCCCEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA