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The map label for this gene is rsmB [H]

Identifier: 148260197

GI number: 148260197

Start: 1328082

End: 1329362

Strand: Reverse

Name: rsmB [H]

Synonym: Acry_1193

Alternate gene names: 148260197

Gene position: 1329362-1328082 (Counterclockwise)

Preceding gene: 148260198

Following gene: 148260196

Centisome position: 39.22

GC content: 71.27

Gene sequence:

>1281_bases
TTGACCCCCGCGGGCCGGCTGCAGGCGGCGATCGAGCTGCTCGGCACGATCGAGGCCGATCGCCGGCCGGCCGATGCCAT
CGCCAACGACTTCCTTCGCACGCGCCGCTTCATCGGCGGCGGTGACCGGCGCGAGATCGGCGAGATCGTCTGGTCGGTGC
TGCGTGCCCGCCGCCGGCTCGGCTGGTGGCTGGAGCGTGTCGGCGCCGAGGCGACGCCGCGCCTGCTCATCGCCTCCCTG
CGCGTGCTCACCGGCATGCCGGCGCCGCGCGTCGCCGGGCTGTTCGGCGTGATGCGGTTCGCCCCGCCGCCGCTCGACGC
CGCCGAGCGGCGCGCGCTCGACCGGCTCGACACCCATACGCTCGACCATCCGTCGATGCCCGAGGCGGTGCGGCTGGAAA
TGCCCGATTTCGTGCTGCCTTTGCTGCGCGAGCGCTTTGGCGACAAGCTCGAGTCGGAATGCGCGGCGCTGATGCAGCCC
GCGCCGCTCGATCTGCGGGTCAACCTGCTCAAGGCCACGCGCGAGGAGGCGCTCGCCGCCCTGGCCGCCGCCGGGCTGAA
GGCCGAGCCAACGCGGCTCAGCCCCTGGGGCCTGCGCCTTCCTGGCCGTCAGAACGTCACTGTTGCGGCACCGTTTCGCG
ACGGGCTCGTGGAAATCCAGGACGAGGGCAGCCAGCTCGTCGCCCTGCTCGCCGGGGCGCAGCCGGGCATGCGCGTCGCC
GATTACTGCGCTGGCGCTGGCGGCAAGACGCTGGCTCTGGCGATGACGATGGCCAACAAGGGCCACATCATTGCCTGCGA
CGTGTCCGCGCCGCGGCTCGATGGGGCGATCCGCCGGCTGCGCCGCGCCGGTGTGCACAATGCCGAGCGACACCTGCTCG
AATCCGGCGACAAATGGGTGAAGCGGCAGGAGAAGAAATTCGACCGCGTGCTGGTCGACGCCCCCTGCACCGGCGCCGGC
ACCTGGCGCCGCAACCCCGATGCACGGCTGAAGCTGACCGAGACAGATCTCGCCGAACTCACCGCCAAGCAGGCGGCGAT
CCTGGATGCCGCGCAACGCCTGGTCAAACCCGGCGGCCGGCTGGTTTATGCCACCTGCTCGGTGCTGCGCCCGGAAAACG
AGGCGCAGATCGAGAGTTTTCTCGCGCGGCATTCCGATTTCGCGATCGTCCCCGTCGCCGATGGCCTGCCGGCCTATCTG
CATGGGGACATGCTGCGCCTGTCCCCCGCGCGCGACGGCACCGACGGGTTCTTCGCCTGCCGGATGGAGCGGCGCGGATG
A

Upstream 100 bases:

>100_bases
GGCGCAATTTCGCCGCATCACCGGCGCCGGCCTCCGCGAGAGCCACGTTCATGACGTGGCGATCACCCGCGAGGCGCCGA
ATTACCGGCAGGACTGAGCC

Downstream 100 bases:

>100_bases
TCGCCATCCGCCGCGCCCGCACCGCGGATGCGCCGGGCATCGGCGCCGTCCATGTCGCGAGCTGGCGCAGCGCCTATGCG
GGCGTGTTACCGGAGCCGGT

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTPAGRLQAAIELLGTIEADRRPADAIANDFLRTRRFIGGGDRREIGEIVWSVLRARRRLGWWLERVGAEATPRLLIASL
RVLTGMPAPRVAGLFGVMRFAPPPLDAAERRALDRLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFGDKLESECAALMQP
APLDLRVNLLKATREEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGAQPGMRVA
DYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLLESGDKWVKRQEKKFDRVLVDAPCTGAG
TWRRNPDARLKLTETDLAELTAKQAAILDAAQRLVKPGGRLVYATCSVLRPENEAQIESFLARHSDFAIVPVADGLPAYL
HGDMLRLSPARDGTDGFFACRMERRG

Sequences:

>Translated_426_residues
MTPAGRLQAAIELLGTIEADRRPADAIANDFLRTRRFIGGGDRREIGEIVWSVLRARRRLGWWLERVGAEATPRLLIASL
RVLTGMPAPRVAGLFGVMRFAPPPLDAAERRALDRLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFGDKLESECAALMQP
APLDLRVNLLKATREEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGAQPGMRVA
DYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLLESGDKWVKRQEKKFDRVLVDAPCTGAG
TWRRNPDARLKLTETDLAELTAKQAAILDAAQRLVKPGGRLVYATCSVLRPENEAQIESFLARHSDFAIVPVADGLPAYL
HGDMLRLSPARDGTDGFFACRMERRG
>Mature_425_residues
TPAGRLQAAIELLGTIEADRRPADAIANDFLRTRRFIGGGDRREIGEIVWSVLRARRRLGWWLERVGAEATPRLLIASLR
VLTGMPAPRVAGLFGVMRFAPPPLDAAERRALDRLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFGDKLESECAALMQPA
PLDLRVNLLKATREEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGAQPGMRVAD
YCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLLESGDKWVKRQEKKFDRVLVDAPCTGAGT
WRRNPDARLKLTETDLAELTAKQAAILDAAQRLVKPGGRLVYATCSVLRPENEAQIESFLARHSDFAIVPVADGLPAYLH
GDMLRLSPARDGTDGFFACRMERRG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=355, Percent_Identity=28.169014084507, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI76150623, Length=355, Percent_Identity=28.169014084507, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI32698918, Length=174, Percent_Identity=31.0344827586207, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI23199998, Length=249, Percent_Identity=32.9317269076305, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI8922322, Length=249, Percent_Identity=32.9317269076305, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI270288818, Length=249, Percent_Identity=32.9317269076305, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI270288816, Length=249, Percent_Identity=32.9317269076305, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI301336155, Length=255, Percent_Identity=27.4509803921569, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI39995082, Length=286, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI40316918, Length=170, Percent_Identity=33.5294117647059, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI11545785, Length=165, Percent_Identity=30.9090909090909, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI2367212, Length=417, Percent_Identity=29.4964028776978, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI87081985, Length=306, Percent_Identity=30.3921568627451, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17536757, Length=285, Percent_Identity=30.5263157894737, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71998419, Length=298, Percent_Identity=30.8724832214765, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115534021, Length=251, Percent_Identity=32.6693227091633, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25143471, Length=177, Percent_Identity=34.4632768361582, Blast_Score=71, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=285, Percent_Identity=26.6666666666667, Blast_Score=93, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6319447, Length=319, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI22024126, Length=283, Percent_Identity=30.0353356890459, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI19920494, Length=208, Percent_Identity=27.4038461538462, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355201, Length=186, Percent_Identity=30.1075268817204, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46598; Mature: 46466

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAGRLQAAIELLGTIEADRRPADAIANDFLRTRRFIGGGDRREIGEIVWSVLRARRRL
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GWWLERVGAEATPRLLIASLRVLTGMPAPRVAGLFGVMRFAPPPLDAAERRALDRLDTHT
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LDHPSMPEAVRLEMPDFVLPLLRERFGDKLESECAALMQPAPLDLRVNLLKATREEALAA
CCCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGAQPGMRVA
HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHEEHHHHCCCCCCHHH
DYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLLESGDKWV
HHHCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
KRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQRLVKPGGR
HHHHHHHHHEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
LVYATCSVLRPENEAQIESFLARHSDFAIVPVADGLPAYLHGDMLRLSPARDGTDGFFAC
EEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECCCCCCCCCEEEE
RMERRG
EECCCC
>Mature Secondary Structure 
TPAGRLQAAIELLGTIEADRRPADAIANDFLRTRRFIGGGDRREIGEIVWSVLRARRRL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GWWLERVGAEATPRLLIASLRVLTGMPAPRVAGLFGVMRFAPPPLDAAERRALDRLDTHT
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LDHPSMPEAVRLEMPDFVLPLLRERFGDKLESECAALMQPAPLDLRVNLLKATREEALAA
CCCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGAQPGMRVA
HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHEEHHHHCCCCCCHHH
DYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLLESGDKWV
HHHCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
KRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQRLVKPGGR
HHHHHHHHHEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
LVYATCSVLRPENEAQIESFLARHSDFAIVPVADGLPAYLHGDMLRLSPARDGTDGFFAC
EEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECCCCCCCCCEEEE
RMERRG
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]