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The map label for this gene is xpsF [H]

Identifier: 148259903

GI number: 148259903

Start: 981653

End: 982873

Strand: Reverse

Name: xpsF [H]

Synonym: Acry_0892

Alternate gene names: 148259903

Gene position: 982873-981653 (Counterclockwise)

Preceding gene: 148259904

Following gene: 148259902

Centisome position: 29.0

GC content: 73.87

Gene sequence:

>1221_bases
ATGCCTGATTTCGTTTTCCGGGTGATCGACCGCGCCGGCGCCCCCGCCCGCCTCGCCATCGACGCGGTGAGCGAGGCCGA
GGCGATCGAGACAATCAAGCGCCGCGGCCTGATCCTGCTCGGCGCCGCCCCGCGCCGCGGCGCCGGCCTGCTCGCCCTGT
TCAACCGCGACATCGGCGGCGCCCCCCGCCTCGGCGCCGACGCGCTGGCCGATTTCACCCGCGAACTCGCCGCGATGCTC
GGCGCCGGGCTCGACCTCGAACGCGCCTTGCGTTTCGCCGCCGGCACCGCCGCCACCCCGCGCGTCCGCGCCATCATCCT
CGCGATCTGCGACAAGGTGCGCGACGGCGCCGCCCTCTGGCGCGCGCTCGGCCACGAGCCGCGTAGCTTCCCGCCTTTCT
ATGTCGGGCTGGTGCGCGCCGGCGAGGAATCCGGCGCCCTCGCCGCGACGCTCGAAGACCTCGCCGAATTGCTGGAGCGC
AACCGCTCGCTGCGCGCCGCGATGATCGCCGGCCTCACCTACCCCGCCCTGCTCGCCCTCGCCGCGACCGGCGCGATCGT
CTTCCTACTCACCAACGTGCTGCCCGAATTCGTGCCGATCTTCGCCGAAAACGGCGTCCCCCTGCCCGCCACCACGCGCC
TACTGCTCACGATTGGCCAGGCCTGCGCCGCGTCCTGGCCCTATGCGCTGGCGCTGTTCGCCCTCGCCATTCCCGGCATC
CGCCTGCTGCTCGCCCGCCCCGCCCCGCGCCTGCGGTTCGACCGTCTGGTCCTCCGCCTGCCGCTGCTCGGCGCCCTGCT
GCGCGAGGCGCTGGCGGCCCGCTTCACCCGCACGCTCGGCACGCTGCTCGGCAATGGCGTCGCCCTCGTCCCGGCGATGG
CGATCGTGCAGAACGTGATCGGCAACCGCGCCGCCGCCCTTGCCATCGCCACGGCGGCGGATGCGGCGCGGCACGGCAAG
GGCCTCGCCGCCGGTCTCGCCGCCGCACGGCTGATGCCGGAGCGCACGGTGCAGCTGCTCCGCCTCGGCGAGGAAACCGG
CCAGCTCGGCCGCATGGCGCTGCGGGCCGCCGCGATCCACGAGGAACGCGCGCGGCTCGGCGTGCAGAAGCTGGTCTCGC
TGCTGGTTCCCGCCATCACCATCGTGATGGGCGGCGCGATCGGCTTCATCGTCGCCTCGCTGCTGCTGGCCATGCTCGGT
CTCGATGCCCTCGCCCACTGA

Upstream 100 bases:

>100_bases
CGCCGCCGACCTGCGCAGCCTGGCCGATGCCGCGCGCGATGCGGTGCTGGCCGGCGAAACCTCGCTCGCCGAAAGTCTGC
TCGCATGATGCCGCGCCACC

Downstream 100 bases:

>100_bases
GCCCGCGCCCACTGAGCCCGCGCCTGACGATCGCGGCTACACGCTGCTCGAACTGCTCGTCGTCGTCGTCATTCTCGGCC
TCGCCCTCACGCTCGCCGCC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPDFVFRVIDRAGAPARLAIDAVSEAEAIETIKRRGLILLGAAPRRGAGLLALFNRDIGGAPRLGADALADFTRELAAML
GAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHEPRSFPPFYVGLVRAGEESGALAATLEDLAELLER
NRSLRAAMIAGLTYPALLALAATGAIVFLLTNVLPEFVPIFAENGVPLPATTRLLLTIGQACAASWPYALALFALAIPGI
RLLLARPAPRLRFDRLVLRLPLLGALLREALAARFTRTLGTLLGNGVALVPAMAIVQNVIGNRAAALAIATAADAARHGK
GLAAGLAAARLMPERTVQLLRLGEETGQLGRMALRAAAIHEERARLGVQKLVSLLVPAITIVMGGAIGFIVASLLLAMLG
LDALAH

Sequences:

>Translated_406_residues
MPDFVFRVIDRAGAPARLAIDAVSEAEAIETIKRRGLILLGAAPRRGAGLLALFNRDIGGAPRLGADALADFTRELAAML
GAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHEPRSFPPFYVGLVRAGEESGALAATLEDLAELLER
NRSLRAAMIAGLTYPALLALAATGAIVFLLTNVLPEFVPIFAENGVPLPATTRLLLTIGQACAASWPYALALFALAIPGI
RLLLARPAPRLRFDRLVLRLPLLGALLREALAARFTRTLGTLLGNGVALVPAMAIVQNVIGNRAAALAIATAADAARHGK
GLAAGLAAARLMPERTVQLLRLGEETGQLGRMALRAAAIHEERARLGVQKLVSLLVPAITIVMGGAIGFIVASLLLAMLG
LDALAH
>Mature_405_residues
PDFVFRVIDRAGAPARLAIDAVSEAEAIETIKRRGLILLGAAPRRGAGLLALFNRDIGGAPRLGADALADFTRELAAMLG
AGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHEPRSFPPFYVGLVRAGEESGALAATLEDLAELLERN
RSLRAAMIAGLTYPALLALAATGAIVFLLTNVLPEFVPIFAENGVPLPATTRLLLTIGQACAASWPYALALFALAIPGIR
LLLARPAPRLRFDRLVLRLPLLGALLREALAARFTRTLGTLLGNGVALVPAMAIVQNVIGNRAAALAIATAADAARHGKG
LAAGLAAARLMPERTVQLLRLGEETGQLGRMALRAAAIHEERARLGVQKLVSLLVPAITIVMGGAIGFIVASLLLAMLGL
DALAH

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=404, Percent_Identity=30.6930693069307, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1786295, Length=343, Percent_Identity=28.8629737609329, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42489; Mature: 42358

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFVFRVIDRAGAPARLAIDAVSEAEAIETIKRRGLILLGAAPRRGAGLLALFNRDIGG
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCC
APRLGADALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALW
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RALGHEPRSFPPFYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLAL
HHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AATGAIVFLLTNVLPEFVPIFAENGVPLPATTRLLLTIGQACAASWPYALALFALAIPGI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RLLLARPAPRLRFDRLVLRLPLLGALLREALAARFTRTLGTLLGNGVALVPAMAIVQNVI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GNRAAALAIATAADAARHGKGLAAGLAAARLMPERTVQLLRLGEETGQLGRMALRAAAIH
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EERARLGVQKLVSLLVPAITIVMGGAIGFIVASLLLAMLGLDALAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDFVFRVIDRAGAPARLAIDAVSEAEAIETIKRRGLILLGAAPRRGAGLLALFNRDIGG
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCC
APRLGADALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALW
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RALGHEPRSFPPFYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLAL
HHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AATGAIVFLLTNVLPEFVPIFAENGVPLPATTRLLLTIGQACAASWPYALALFALAIPGI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RLLLARPAPRLRFDRLVLRLPLLGALLREALAARFTRTLGTLLGNGVALVPAMAIVQNVI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GNRAAALAIATAADAARHGKGLAAGLAAARLMPERTVQLLRLGEETGQLGRMALRAAAIH
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EERARLGVQKLVSLLVPAITIVMGGAIGFIVASLLLAMLGLDALAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]