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The map label for this gene is agaR [H]

Identifier: 148259474

GI number: 148259474

Start: 510041

End: 510940

Strand: Reverse

Name: agaR [H]

Synonym: Acry_0458

Alternate gene names: 148259474

Gene position: 510940-510041 (Counterclockwise)

Preceding gene: 148259485

Following gene: 148259473

Centisome position: 15.08

GC content: 66.89

Gene sequence:

>900_bases
ATGTTGCTGGCATCGATAGCAGATGGGCAGCCTGGGAACATCGACGTGACGCTCGGCGCGAAAAGTGCCGTGCTGCAGCG
GCGGCTGAAGATCGCCGACTGGATTCGCCAGTACGGGCAAATGCGCGTTGATGAGCTCAGCACGGCGCTAAAGGTTTCCG
AAGTCACCATCCGTGGCGATCTCACTTATCTTGAGGAGCAGGGGCTGATCGTCCGCAGTTTCGGCAAAGCGATAGCGGCG
AAATCGGGCGCGCCGCGCGACCGGCCCGCCGGCGCGCCACTGACCAAGGCGCTGCTCGTGCCGATGCTGCGGCGGGCGCA
GGCGCTGATCGGACCCGACCAGACCGTGCTGATCGGCCCTGGCCCGCTCGCCACCCAGGCAATTCCTTGGCTTGCGGAAA
TTCCGGGAGTTTCCGTGGTGCTGACCAGCACCGAGGCGATCCCCCTCGCCCGCACCTGCCTCGATGCGAGGATCTACCTG
CTCGGCGGCGAGATTACCGCGGAGAGCGGTATGATCGAAGGCGCAGGCGCCCTCAGGATGCTTGACCATTTTGCGCTGGG
CTGGTCGATCCTCGAGGCGGACGCCCTGTCCGCCGATTCGGCGCTGCTGGTGGCCGCCAAGCCCGCCGAACGGCTGGCCG
AGGCGGCGATACGGCGCAGTACGCGCAGCATCGTGTTGATCGGCAACCCTGCGCTCTCGCTCGAACGGCGGACGGCGCAG
CTCGGCCTTACCGGGATTTCCGACCTGATCCTGCCCGGCATGCCCAGCAACCGTCTGCGCGACATCCTCCTCGGCGCCGG
CTTCAGGCCTGTCGAGACCGATGGCGGAACCGAGGCGCATTTCTCCAGCCATCCCGCGCATAGCCGGAGCGGCGCCAGGG
CGTTCGGCGAGGCGTCATGA

Upstream 100 bases:

>100_bases
AAAACACTAATTCATAATGAAAATGCTATAGAATTGGTTAAGGGCAGTCATCATGACATGATTCGGCCGCTTTCGTTTCG
AAACCTATGGACTTCCGAGC

Downstream 100 bases:

>100_bases
CCGGCATGATCGTGACCATGGGTGAAATCCTCGTCGACATTCTCGCCGAGGAAAAGGGCCAGGGCTTCCACGAGCCCGGC
CGGCTGCTTGGCCCCTTCCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLLASIADGQPGNIDVTLGAKSAVLQRRLKIADWIRQYGQMRVDELSTALKVSEVTIRGDLTYLEEQGLIVRSFGKAIAA
KSGAPRDRPAGAPLTKALLVPMLRRAQALIGPDQTVLIGPGPLATQAIPWLAEIPGVSVVLTSTEAIPLARTCLDARIYL
LGGEITAESGMIEGAGALRMLDHFALGWSILEADALSADSALLVAAKPAERLAEAAIRRSTRSIVLIGNPALSLERRTAQ
LGLTGISDLILPGMPSNRLRDILLGAGFRPVETDGGTEAHFSSHPAHSRSGARAFGEAS

Sequences:

>Translated_299_residues
MLLASIADGQPGNIDVTLGAKSAVLQRRLKIADWIRQYGQMRVDELSTALKVSEVTIRGDLTYLEEQGLIVRSFGKAIAA
KSGAPRDRPAGAPLTKALLVPMLRRAQALIGPDQTVLIGPGPLATQAIPWLAEIPGVSVVLTSTEAIPLARTCLDARIYL
LGGEITAESGMIEGAGALRMLDHFALGWSILEADALSADSALLVAAKPAERLAEAAIRRSTRSIVLIGNPALSLERRTAQ
LGLTGISDLILPGMPSNRLRDILLGAGFRPVETDGGTEAHFSSHPAHSRSGARAFGEAS
>Mature_299_residues
MLLASIADGQPGNIDVTLGAKSAVLQRRLKIADWIRQYGQMRVDELSTALKVSEVTIRGDLTYLEEQGLIVRSFGKAIAA
KSGAPRDRPAGAPLTKALLVPMLRRAQALIGPDQTVLIGPGPLATQAIPWLAEIPGVSVVLTSTEAIPLARTCLDARIYL
LGGEITAESGMIEGAGALRMLDHFALGWSILEADALSADSALLVAAKPAERLAEAAIRRSTRSIVLIGNPALSLERRTAQ
LGLTGISDLILPGMPSNRLRDILLGAGFRPVETDGGTEAHFSSHPAHSRSGARAFGEAS

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789829, Length=228, Percent_Identity=27.6315789473684, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 31472; Mature: 31472

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLASIADGQPGNIDVTLGAKSAVLQRRLKIADWIRQYGQMRVDELSTALKVSEVTIRGD
CEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECC
LTYLEEQGLIVRSFGKAIAAKSGAPRDRPAGAPLTKALLVPMLRRAQALIGPDQTVLIGP
EEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GPLATQAIPWLAEIPGVSVVLTSTEAIPLARTCLDARIYLLGGEITAESGMIEGAGALRM
CCHHHHHCCHHHHCCCCEEEEECCCCCHHHHHHHHEEEEEECCEEECCCCCCCCCHHHHH
LDHFALGWSILEADALSADSALLVAAKPAERLAEAAIRRSTRSIVLIGNPALSLERRTAQ
HHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LGLTGISDLILPGMPSNRLRDILLGAGFRPVETDGGTEAHFSSHPAHSRSGARAFGEAS
HCCCCHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLASIADGQPGNIDVTLGAKSAVLQRRLKIADWIRQYGQMRVDELSTALKVSEVTIRGD
CEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECC
LTYLEEQGLIVRSFGKAIAAKSGAPRDRPAGAPLTKALLVPMLRRAQALIGPDQTVLIGP
EEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GPLATQAIPWLAEIPGVSVVLTSTEAIPLARTCLDARIYLLGGEITAESGMIEGAGALRM
CCHHHHHCCHHHHCCCCEEEEECCCCCHHHHHHHHEEEEEECCEEECCCCCCCCCHHHHH
LDHFALGWSILEADALSADSALLVAAKPAERLAEAAIRRSTRSIVLIGNPALSLERRTAQ
HHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LGLTGISDLILPGMPSNRLRDILLGAGFRPVETDGGTEAHFSSHPAHSRSGARAFGEAS
HCCCCHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]