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The map label for this gene is ihfA [H]

Identifier: 148259288

GI number: 148259288

Start: 309171

End: 309485

Strand: Reverse

Name: ihfA [H]

Synonym: Acry_0268

Alternate gene names: 148259288

Gene position: 309485-309171 (Counterclockwise)

Preceding gene: 148259289

Following gene: 148259287

Centisome position: 9.13

GC content: 65.4

Gene sequence:

>315_bases
ATGAGCACGTTGACACGCGCAGGTCTGGCTGAGTCGATTTACGCGGCGGTTGGGCTGTCGCGCAATGAATCCGCGGCACT
CCTCGAGGCTGTGCTCGACCGCATGAAGCAGGCGCTGGCCGAAGGCGAATCCATCAAGATCAGCGGGTTCGGGACGTTTT
CTGTCCGCCAGAAAGGCCGCCGGATCGGGCGCAACCCCAAGACGGGACGTGAAGTGCCAATCCTGCCGCGCCGCGTGCTG
GTGTTCCGGCCGAGCCAGATCCTCCGCGACGCCGTCGATACCGGCCAGGTTCCGTCGGCGGCAGGCCAGTCTTGA

Upstream 100 bases:

>100_bases
GGCGCTGATCCGCTTCTGAACCGCCGGCGCGCATGGCTCCGGCCGCTGCCCGCAGCCTGTTCCGTGTTGACCCGACAGGC
TTTCTTGCTAATCTTGAAAA

Downstream 100 bases:

>100_bases
CCGACGAGCCGCATCGCCACGAATCCACGCCGGACGAGCACGGCCGCAACCGGGTCCGCAAATCCGCCGAAGCCTACCGC
ACGATCAGCGAGGTGGCGGA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSTLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRIGRNPKTGREVPILPRRVL
VFRPSQILRDAVDTGQVPSAAGQS

Sequences:

>Translated_104_residues
MSTLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRIGRNPKTGREVPILPRRVL
VFRPSQILRDAVDTGQVPSAAGQS
>Mature_103_residues
STLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRIGRNPKTGREVPILPRRVLV
FRPSQILRDAVDTGQVPSAAGQS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=43.956043956044, Blast_Score=92, Evalue=5e-21,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=34.4444444444444, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=35.9550561797753, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11150; Mature: 11019

Theoretical pI: Translated: 11.66; Mature: 11.66

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
RIGRNPKTGREVPILPRRVLVFRPSQILRDAVDTGQVPSAAGQS
HCCCCCCCCCCCCCCCCHHEEECCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGR
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
RIGRNPKTGREVPILPRRVLVFRPSQILRDAVDTGQVPSAAGQS
HCCCCCCCCCCCCCCCCHHEEECCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA