| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is 148259135
Identifier: 148259135
GI number: 148259135
Start: 126107
End: 127360
Strand: Reverse
Name: 148259135
Synonym: Acry_0115
Alternate gene names: NA
Gene position: 127360-126107 (Counterclockwise)
Preceding gene: 148259137
Following gene: 148259134
Centisome position: 3.76
GC content: 66.51
Gene sequence:
>1254_bases ATGGCAAGCAGCGACATCTTCACCCTCGGCCTCGGACTGACCCCACCCTGGCGCGTGGTCGACCAGCGGTTGGAAACCGA CTACCAGCCGCATGAGTTGCATCTGGCCGTCGCCGCCGACCCAGGCGCCCGCTTCCCCTGCCCAACCTGCGGCCGGCTGT GCAAACCGCACGACTGGAAGGAACTGAGCTGGCGGCACCTCAACTTCTTTCAGCACGCCTGCATCATCGAGGCCCGTGTG CCACGCACCGACTGTCCGGAGCACGGCGTACTCCGCATTGCTGTGCCTTGGGCACGTCCCGACAGCGGCTTCACGCTGTT GTTCGAGCAGGCCGCGCTGGCTCTGATGCGCGAGATGCCGGTTGCCGCTGCCGCGCGCATCATCGGCGTCACCGACCAGC GGCTGTGGCGCATTCTGCGGTACTATGTCGGCCGGGCGATCGAGCGGCTCGATCTCAGCGGGGTCGAGGCGATCGCACTC GACGAAACCGCGGCCAAGCGAGGCCACAGCTACGTCACCGTGTTCATTGACCTCGATGCGGCCGAGCGCCCGGTGCTGTT CGTCACCCCCGGAAAGGGTAAGGAATGCATGACCGCCTTCCGGGCCTTCCTGGCGGAGCACGGCGGCGAGGCCCGCCGCA TCGCCGAGGTGGTGTGTGACATGTCGGCGGCCTTCCTTGCTGCTGCGGCGGAGAGCTTCCCGCAGGCCTCGGTCACCGTG GACTGGTTCCACGTCGTGCAGATCTTCACCACCGCGGTCGAGCAGGTGCGGCGCGCCGAGGCGCATCAGCACAACCTGCC CAAGGGGGTACGCTGGGCCACGTTGAAGCGACCGGAAAACCTGACCATGGCCCAGCGGCAGGCGCTCGACCAGTTGGAGA ACAGCGGCTTCGCCACAGCCGAAGCCTATCGCGCCAAGGAGATGCTGCGCTGGGTTCGCCTGGCCGCAACGCCACAGGCC GCGCGCTGGCGGCTGACCAACTTCCTCAACCACGTCACCGCCCGGCTGGACGATCCCGACCACCTGCTCGATCCTGTTCG ACAGGCCGTCGATACCGTACGGCGCAATGCCAAGCGGATCATTCGACGCTGGAAGTCAGGCCATTCCAATGCCCGCCTCG AAGCGCTCAATGGGCTGTTCCAGGCAGCCCGCGCTCGCGCCCGAGGCTATCGCAACACCGCTACCTTCGCGTGCATCATC TACCTGCTCGGCGCGCCCATCAACGCCATGCTCGACGTCTTCCATTCCACTTGA
Upstream 100 bases:
>100_bases GCAGACGGGCCGAGCAGCCGCATCCCGCAGTCCGATCGCGCATTGGCGCGGCATGCGGTGCCAGCCCGCACGGGACACTC TGATTGCGCGGAGCACCGCC
Downstream 100 bases:
>100_bases GACGTCGAAGAGCCAAAAATAATTCGTGCAAGCGAGCTCGGGGCAGCGCGGCACAGAAATCAAACGGGGACGGAACAATG CCGACGTCGGCGACTGAAGC
Product: transposase, IS204/IS1001/IS1096/IS1165 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARV PRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTDQRLWRILRYYVGRAIERLDLSGVEAIAL DETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQA ARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACII YLLGAPINAMLDVFHST
Sequences:
>Translated_417_residues MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARV PRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTDQRLWRILRYYVGRAIERLDLSGVEAIAL DETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQA ARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACII YLLGAPINAMLDVFHST >Mature_416_residues ASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARVP RTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTDQRLWRILRYYVGRAIERLDLSGVEAIALD ETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTVD WFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQAA RWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIY LLGAPINAMLDVFHST
Specific function: Unknown
COG id: COG3464
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 12 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002560 [H]
Pfam domain/function: PF01610 Transposase_12 [H]
EC number: NA
Molecular weight: Translated: 46896; Mature: 46765
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWK CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCH ELSWRHLNFFQHACIIEARVPRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMP HHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC VAAAARIIGVTDQRLWRILRYYVGRAIERLDLSGVEAIALDETAAKRGHSYVTVFIDLDA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEEECCC AERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEH DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHH EAYRAKEMLRWVRLAATPQAARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIYLLGAPINAMLDVFHST HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure ASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWK CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCH ELSWRHLNFFQHACIIEARVPRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMP HHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC VAAAARIIGVTDQRLWRILRYYVGRAIERLDLSGVEAIALDETAAKRGHSYVTVFIDLDA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEEECCC AERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEH DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHH EAYRAKEMLRWVRLAATPQAARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIYLLGAPINAMLDVFHST HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]