Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

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The map label for this gene is 148259123

Identifier: 148259123

GI number: 148259123

Start: 111944

End: 114145

Strand: Reverse

Name: 148259123

Synonym: Acry_0103

Alternate gene names: NA

Gene position: 114145-111944 (Counterclockwise)

Preceding gene: 148259124

Following gene: 148259122

Centisome position: 3.37

GC content: 52.5

Gene sequence:

>2202_bases
ATGCTTGATCAGGTTGCTAGCGCCCCAGCGTTACACGAAAATATGACGAACGCGGCCGACGTCATAGCGGCGGGGGTGGC
TCTTGATGCCGGTAACACCCGCGAGTGCGCAAGGAAGCTTTTCCAGCAAGCGAGTGAGCTGGCTCCATCATGGGATGAGC
CGTTGATTAGGCTCGCCCAGAGTTATCGTGCTGATGGTCATGTGGCTGAGGCCAAAGAGCTCTATATCCAAGCTAGCATA
CGTAATCGTTGGCGGATTGAACCTTTGCTTGCTTATGGAATATTGGCACTACAAAGCAACGACCCGCACGACGCAGTGGG
ATATCTTTCGCGAGCTACCGATCTTAATCCCACCAACCATCAGGCTTGGCATGGACTTGCGCTTGCGCTCGGTGCGCTCG
GACTTCAGGGTGCCGCATTGCGCGCGATGGCCAACGCCGGAAATCTTGCACCTGATATACTTCATTATGCAATTACGTAT
AATGAACTACGCGACACGGTTGATCATGATCTGATTTTGCAGATCCGAGAGCCGAAGTGGACCACTGCCATTGAGCTCTG
TCTTGAAGCCAATGCAGCTCTTAGGCGCGGTGGGGCTGAAGAGGCGATCGCTCTTTTAGAGACTGCGATCGACGTTGAGC
CGGATGCGTCTGATATCCTAGCTTTGCTCGGCAATGCGTATTTGGCGAATCAGATGCCAGAAATGGCAGAATTACATCTG
CGCAAAGCCCTTCTCCGTGCGCCCGAAAACATCGATATCGCCAATGATCTAGCTGTCGCACTTGGCCGACAGTATCGTTT
TGGCGATGCTTCCGATATATTGAATAAATTAGATATTCCCGCAAACGCGAGCTCTACGATATTATTAAATCGCGCTACGA
TCAGAGCATCAGCTGGCGATCTCGCAGGAAGTGCAAGGGACATCAAAGCGGCAACCCCCAAAGCCAATGACCGGTCTCGG
CTGCGAGCTGAATGTTCCTTAATTCCGTATCAAAGCAATGCGACCGCGGAGCTTCTTCTGGACTCGACCCGAAAACTCGC
CGCGACATTGCCCGAAGACTGCGAACCACTGATGAAGCCCTCTGTTGTTGATCCTGATCGTCCACTTCGAATCGGCCTAC
TGTCTCATTCTCTGCGACAACATCCTGTAGGATGGCTCACATTTGCCGGTCTGGAAAATTTAGATCGAGATGCATACGAG
CTCTATTGTTTTGGTCACTTCGCTGCAGGAGATCCATTTGCGCAGCGGCTTGCACGACGTGTGCACAAATGGCAAGACCG
AATCACAAAATACGAGGCGGAGATTGCCTCAAATATTGCCGATTGTAATATCGATATTCTTATTGACTTGAGTGGCTTTG
GTGACAATGGATTGATTGGAAGTTTGGCGTATCGCCCGGCGCCCGTCCAAATAAAATGGGTTGGCTCACAGGCGTCTACA
ACTGGCATGAAGCGTGTTGACTGGTTCATTACGGATCGATGGGAGACCCCGGAGGGGTTTGATCAATATTATACGGAACA
GCTATTACGGTTGCCGGACGGCTATGTCTGCTATTCTCCTCCCCCAACGTCGCCGCCTGTCAGCAATTTGCCGGCTCTTG
CAAACGGTCATGTCACCTTTGGCTGCTTCAATAATCTGACAAAACTGACCGATGAGACATTATCGCTCTGGGGACGGATC
CTTGAACAGGTCGATAACGCCCACCTGCTCCTCCGCTGCCCGCAATTTTCTGAAGATGGAATTCCTGAGCGCTTCATCTC
TCGAGCGCATGCTCTTGGAGTTGATACGAGTCGGGTCGAATTGCGCGGTCGAGCTCCGCATCCAGAATTCATCGAAGGCT
ATAAGGACGTTGATATCGCACTAGATCCATTCCCGTATTCAGGTGGGCTAACGACATGCGAATCGATGTTTATGGGGGTG
CCTGTCATCACTTTGGCTGGTGATTTCTTCGCCGCACGTCATTCGGTGAGCCACCTTTCGAACGTGGGCCTGACGGATTG
CGTTACAGAGAGTCCGGAACAGTATATCGATCGTGCCGTTGCCATGTCCTCGGATCTGGAAGCGCTAGCCGCACGTCGGG
CTCGATTGCGCGAACAGATGCTCACGAGTCCCCTCTGTGACGCGAAGCGTTTTGGTCGTAATCTCGGTGCCGCGTTGCGC
TATGCGTGGCAGGATTATTGTCGTAACGGCTGCCGGGCTTGA

Upstream 100 bases:

>100_bases
CTCGACACGAGTCTCCTAGCCGTCCAAGCAGCCGTAGGAACAGGAAATTGGGACGAGGCCACATTGCTGTTTAGCGACAA
TACGCGCAGTTTGCCACGCC

Downstream 100 bases:

>100_bases
TCAATCGCCGCAACTGTGGTGCTGACGCGGGATGATCCAATTTTCCGCCCGCGTCGGCCGAACAAGGCCGGCGGCTACTT
TCGCTATGGCTGCCCGGGCT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Methyltransferase Type; TPR Domain Protein; FkbM Family Methyltransferase; SPY Protein; TPR Repeat Protein; Glycosyltransferase TPR Domain Protein; TPR Repeat Domain-Containing Protein; Glycosyl Transferase Family Protein; Tetratricopeptide Repeat-Containing Protein; Tpr Repeat-Containing Protein; Glycosyltransferase TPR Domain-Containing Protein; Methyltransferase Regulatory Domain; Porphyrin Biosynthesis Protein; Tetratricopeptide Domain Protein; Transferase; Tetratricopeptide Repeat Family Protein; TPR Repeat-Containing Glycosyl Transferase; Sulfotransferase; O-Linked GLCNAC Transferase; TPR Domain/SEC-C Motif Domain Protein; Glycosyl Transferase TPR Repeat Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Glycosyl Transferase; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing SPINDLY Family Protein; O-Linked Acetylglucosamine Transferase

Number of amino acids: Translated: 733; Mature: 733

Protein sequence:

>733_residues
MLDQVASAPALHENMTNAADVIAAGVALDAGNTRECARKLFQQASELAPSWDEPLIRLAQSYRADGHVAEAKELYIQASI
RNRWRIEPLLAYGILALQSNDPHDAVGYLSRATDLNPTNHQAWHGLALALGALGLQGAALRAMANAGNLAPDILHYAITY
NELRDTVDHDLILQIREPKWTTAIELCLEANAALRRGGAEEAIALLETAIDVEPDASDILALLGNAYLANQMPEMAELHL
RKALLRAPENIDIANDLAVALGRQYRFGDASDILNKLDIPANASSTILLNRATIRASAGDLAGSARDIKAATPKANDRSR
LRAECSLIPYQSNATAELLLDSTRKLAATLPEDCEPLMKPSVVDPDRPLRIGLLSHSLRQHPVGWLTFAGLENLDRDAYE
LYCFGHFAAGDPFAQRLARRVHKWQDRITKYEAEIASNIADCNIDILIDLSGFGDNGLIGSLAYRPAPVQIKWVGSQAST
TGMKRVDWFITDRWETPEGFDQYYTEQLLRLPDGYVCYSPPPTSPPVSNLPALANGHVTFGCFNNLTKLTDETLSLWGRI
LEQVDNAHLLLRCPQFSEDGIPERFISRAHALGVDTSRVELRGRAPHPEFIEGYKDVDIALDPFPYSGGLTTCESMFMGV
PVITLAGDFFAARHSVSHLSNVGLTDCVTESPEQYIDRAVAMSSDLEALAARRARLREQMLTSPLCDAKRFGRNLGAALR
YAWQDYCRNGCRA

Sequences:

>Translated_733_residues
MLDQVASAPALHENMTNAADVIAAGVALDAGNTRECARKLFQQASELAPSWDEPLIRLAQSYRADGHVAEAKELYIQASI
RNRWRIEPLLAYGILALQSNDPHDAVGYLSRATDLNPTNHQAWHGLALALGALGLQGAALRAMANAGNLAPDILHYAITY
NELRDTVDHDLILQIREPKWTTAIELCLEANAALRRGGAEEAIALLETAIDVEPDASDILALLGNAYLANQMPEMAELHL
RKALLRAPENIDIANDLAVALGRQYRFGDASDILNKLDIPANASSTILLNRATIRASAGDLAGSARDIKAATPKANDRSR
LRAECSLIPYQSNATAELLLDSTRKLAATLPEDCEPLMKPSVVDPDRPLRIGLLSHSLRQHPVGWLTFAGLENLDRDAYE
LYCFGHFAAGDPFAQRLARRVHKWQDRITKYEAEIASNIADCNIDILIDLSGFGDNGLIGSLAYRPAPVQIKWVGSQAST
TGMKRVDWFITDRWETPEGFDQYYTEQLLRLPDGYVCYSPPPTSPPVSNLPALANGHVTFGCFNNLTKLTDETLSLWGRI
LEQVDNAHLLLRCPQFSEDGIPERFISRAHALGVDTSRVELRGRAPHPEFIEGYKDVDIALDPFPYSGGLTTCESMFMGV
PVITLAGDFFAARHSVSHLSNVGLTDCVTESPEQYIDRAVAMSSDLEALAARRARLREQMLTSPLCDAKRFGRNLGAALR
YAWQDYCRNGCRA
>Mature_733_residues
MLDQVASAPALHENMTNAADVIAAGVALDAGNTRECARKLFQQASELAPSWDEPLIRLAQSYRADGHVAEAKELYIQASI
RNRWRIEPLLAYGILALQSNDPHDAVGYLSRATDLNPTNHQAWHGLALALGALGLQGAALRAMANAGNLAPDILHYAITY
NELRDTVDHDLILQIREPKWTTAIELCLEANAALRRGGAEEAIALLETAIDVEPDASDILALLGNAYLANQMPEMAELHL
RKALLRAPENIDIANDLAVALGRQYRFGDASDILNKLDIPANASSTILLNRATIRASAGDLAGSARDIKAATPKANDRSR
LRAECSLIPYQSNATAELLLDSTRKLAATLPEDCEPLMKPSVVDPDRPLRIGLLSHSLRQHPVGWLTFAGLENLDRDAYE
LYCFGHFAAGDPFAQRLARRVHKWQDRITKYEAEIASNIADCNIDILIDLSGFGDNGLIGSLAYRPAPVQIKWVGSQAST
TGMKRVDWFITDRWETPEGFDQYYTEQLLRLPDGYVCYSPPPTSPPVSNLPALANGHVTFGCFNNLTKLTDETLSLWGRI
LEQVDNAHLLLRCPQFSEDGIPERFISRAHALGVDTSRVELRGRAPHPEFIEGYKDVDIALDPFPYSGGLTTCESMFMGV
PVITLAGDFFAARHSVSHLSNVGLTDCVTESPEQYIDRAVAMSSDLEALAARRARLREQMLTSPLCDAKRFGRNLGAALR
YAWQDYCRNGCRA

Specific function: Unknown

COG id: COG3914

COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307150, Length=190, Percent_Identity=28.9473684210526, Blast_Score=94, Evalue=5e-19,
Organism=Homo sapiens, GI32307148, Length=190, Percent_Identity=28.9473684210526, Blast_Score=94, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115532692, Length=190, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI115532690, Length=190, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=8e-17,
Organism=Drosophila melanogaster, GI17647755, Length=194, Percent_Identity=29.8969072164948, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24585827, Length=194, Percent_Identity=29.8969072164948, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24585829, Length=194, Percent_Identity=29.8969072164948, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80508; Mature: 80508

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQVASAPALHENMTNAADVIAAGVALDAGNTRECARKLFQQASELAPSWDEPLIRLAQ
CCCCHHCCCHHHHHCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYRADGHVAEAKELYIQASIRNRWRIEPLLAYGILALQSNDPHDAVGYLSRATDLNPTNH
HHCCCCCHHHHHHHEEEEECCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
QAWHGLALALGALGLQGAALRAMANAGNLAPDILHYAITYNELRDTVDHDLILQIREPKW
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
TTAIELCLEANAALRRGGAEEAIALLETAIDVEPDASDILALLGNAYLANQMPEMAELHL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
RKALLRAPENIDIANDLAVALGRQYRFGDASDILNKLDIPANASSTILLNRATIRASAGD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEECCCC
LAGSARDIKAATPKANDRSRLRAECSLIPYQSNATAELLLDSTRKLAATLPEDCEPLMKP
CCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHCC
SVVDPDRPLRIGLLSHSLRQHPVGWLTFAGLENLDRDAYELYCFGHFAAGDPFAQRLARR
CCCCCCCCEEEHHHHHHHHHCCCCEEEECCHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
VHKWQDRITKYEAEIASNIADCNIDILIDLSGFGDNGLIGSLAYRPAPVQIKWVGSQAST
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCCCCCCCEEEEEECCCCCC
TGMKRVDWFITDRWETPEGFDQYYTEQLLRLPDGYVCYSPPPTSPPVSNLPALANGHVTF
CCCHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
GCFNNLTKLTDETLSLWGRILEQVDNAHLLLRCPQFSEDGIPERFISRAHALGVDTSRVE
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
LRGRAPHPEFIEGYKDVDIALDPFPYSGGLTTCESMFMGVPVITLAGDFFAARHSVSHLS
EECCCCCHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHH
NVGLTDCVTESPEQYIDRAVAMSSDLEALAARRARLREQMLTSPLCDAKRFGRNLGAALR
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YAWQDYCRNGCRA
HHHHHHHHCCCCC
>Mature Secondary Structure
MLDQVASAPALHENMTNAADVIAAGVALDAGNTRECARKLFQQASELAPSWDEPLIRLAQ
CCCCHHCCCHHHHHCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYRADGHVAEAKELYIQASIRNRWRIEPLLAYGILALQSNDPHDAVGYLSRATDLNPTNH
HHCCCCCHHHHHHHEEEEECCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
QAWHGLALALGALGLQGAALRAMANAGNLAPDILHYAITYNELRDTVDHDLILQIREPKW
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
TTAIELCLEANAALRRGGAEEAIALLETAIDVEPDASDILALLGNAYLANQMPEMAELHL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
RKALLRAPENIDIANDLAVALGRQYRFGDASDILNKLDIPANASSTILLNRATIRASAGD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEECCCC
LAGSARDIKAATPKANDRSRLRAECSLIPYQSNATAELLLDSTRKLAATLPEDCEPLMKP
CCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHCC
SVVDPDRPLRIGLLSHSLRQHPVGWLTFAGLENLDRDAYELYCFGHFAAGDPFAQRLARR
CCCCCCCCEEEHHHHHHHHHCCCCEEEECCHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
VHKWQDRITKYEAEIASNIADCNIDILIDLSGFGDNGLIGSLAYRPAPVQIKWVGSQAST
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCCCCCCCEEEEEECCCCCC
TGMKRVDWFITDRWETPEGFDQYYTEQLLRLPDGYVCYSPPPTSPPVSNLPALANGHVTF
CCCHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
GCFNNLTKLTDETLSLWGRILEQVDNAHLLLRCPQFSEDGIPERFISRAHALGVDTSRVE
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
LRGRAPHPEFIEGYKDVDIALDPFPYSGGLTTCESMFMGVPVITLAGDFFAARHSVSHLS
EECCCCCHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHH
NVGLTDCVTESPEQYIDRAVAMSSDLEALAARRARLREQMLTSPLCDAKRFGRNLGAALR
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YAWQDYCRNGCRA
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA