Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

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The map label for this gene is 148259064

Identifier: 148259064

GI number: 148259064

Start: 41089

End: 42816

Strand: Reverse

Name: 148259064

Synonym: Acry_0043

Alternate gene names: NA

Gene position: 42816-41089 (Counterclockwise)

Preceding gene: 148259065

Following gene: 148259063

Centisome position: 1.26

GC content: 66.09

Gene sequence:

>1728_bases
ATGCCGCATTCAAAAAAGACGATTTTTCGCCGCGCTCCGCTCTGGGCCGCCACACTTCTCATTGCATTGACCTGCGGCGC
CGTCGGCATTGAGGCTGCGTTCGGCCAGGAGGCGGGCGGCTACATGCCGACGCCGACGGCGGCGAAGCCCGAGGCGTTTC
CGGCGCTGCCCGAACCCGTGACCAAGGGCATGAGCCAGGCAGAGATCGCGCAGGTGCGGCGCGGCGAATATCTCACTGCC
GCAGCGGACTGCATGCCCTGCCACACGGCACCGGGAGCAAAGCCTTTCTCCGGCGGACTGTCCTTCGTCACCCCGTTCGG
CACGCTCTACTCACCCAACATCACCCCGGCCAAGACGACCGGCATCGGCAAGTGGACGCCGCGGCAATTCTACAATGCCC
TGCATTACGGCGTCTCGCCCGGCAGTTCGCTGGGCGTGTTTCCGAAATATCTCTATCCGGCGATGCCCTACACATCCTAT
GCCAAGCTGACGAGGCCGGATGTGATGGCCATCAAGGCCTATCTCGACGCCATACCTGCCGTGCACGCACCGCATGCACC
GAACCGGCTCGGCTTCCCGTTCAACATCCGCGCGATGCTGCTCGGCTGGCGCATCATGTTCTTCAGCACCGCGCCGGTCC
ATTACAAGAAGGACTGGTCGCCCGCGGTGCGCAACGGCGCCTATCTCGCCGAAGCCCTCGGCCATTGCAGCGAGTGCCAT
TCGCCGCGCAACCTGCTGTTCGCCATCAAGTCGGGCGATACGCTGGCCGGCGCGCAGATCCTCGGCGAGCCCTGGTATGC
GCCGAACATATCCTCCTCGAAGACCTATGGCGTCGGCGGGTGGAGCCGGAAGGACCTGGTCGACTACCTGCATGAGGGCG
GCAACATGAACCGTGGCTCGGCATTCGGGCCGATGCAGTCTGTTGTGGATTACAGCCTGAGCCAGCTCCCGCGGCAGGAT
GTCGACGATCTTGCCGCCTATCTGCAGACCGCGACGCCGCCGCGCGAGAACCCGGTGAAGAAGGTGGCGCTTGCCCCGGG
CGAGCTCGCGCAGGGCAAGGCGCTCTACGATGACAACTGCGCCGCCTGCCACCAAGCGGACGGCAAGGGCGTGAAGGACG
TGTTCCCGAATCTCGCCGGGAATGACGCGGTGACCAACGGCCCGTCGGACAACGTGATCGGCATCGTGCTCGGCGGAATG
ATCCCCTGGCACGCCAACGGCCCGGCCATGCCCGCCTTCGGTTCGATGCTGAACGACGCCCAAATCGCCGCGATCGCCAA
CTACGTGCGCACCGCCTGGGGTAACAAGGGCGTGACCGATGCCGATGCCGCCAAGGTGCTGGGCATCCGCGCATCGACCC
CGCCGCACGACATCGCGCTGGCCGACGCCGACTATCTCGACCTGCCGCCGATCGCCTCCGCCGCCGCGCGCAGGATGAAC
TGCCCGCTGCTGACGAAGGACCTCGTCTCGCCCGGCCACGGCACGATGGAGATTATGCAGGGCGTCACGCCGGCAACGCT
CGGCAACCGCACCCGCATGCTGGTCGCCGCGATCCGCAAGGCCTATCCGGACATTACCCAGAAGCGCATGGCGGAATTCC
TGACGGCGGCCTATTGCCCGGTCGTGGCGCAGGAACGCGGCCTGTCGCTCGGGGAGAAGAAGAAGGCGATCCAGCGCTTC
CTCTCCGAGGCGGCGTCGATGGACACGGCCGCCAGGAAGGGGAGCTGA

Upstream 100 bases:

>100_bases
GAAGAGGCGCCGGGCCTACTTGATCAATCAGTAGATATGGCGAATTAGAAATCTGACCGGACACGCCCGCTCCCGCCATG
CAGATCACAGGTAGAATCCG

Downstream 100 bases:

>100_bases
GGCCATTCAGCCGCTGCTTCCCACCGAAACCCTCCGGGGTGCGGCGATCCTGCCGCATCTCGCGGCGCTCGCCCGGCTGC
GGATCGAGGTGTTCCGCGCC

Product: gluconate 2-dehydrogenase

Products: NA

Alternate protein names: GA 2-DH cytochrome c subunit; GADH cytochrome c subunit [H]

Number of amino acids: Translated: 575; Mature: 574

Protein sequence:

>575_residues
MPHSKKTIFRRAPLWAATLLIALTCGAVGIEAAFGQEAGGYMPTPTAAKPEAFPALPEPVTKGMSQAEIAQVRRGEYLTA
AADCMPCHTAPGAKPFSGGLSFVTPFGTLYSPNITPAKTTGIGKWTPRQFYNALHYGVSPGSSLGVFPKYLYPAMPYTSY
AKLTRPDVMAIKAYLDAIPAVHAPHAPNRLGFPFNIRAMLLGWRIMFFSTAPVHYKKDWSPAVRNGAYLAEALGHCSECH
SPRNLLFAIKSGDTLAGAQILGEPWYAPNISSSKTYGVGGWSRKDLVDYLHEGGNMNRGSAFGPMQSVVDYSLSQLPRQD
VDDLAAYLQTATPPRENPVKKVALAPGELAQGKALYDDNCAACHQADGKGVKDVFPNLAGNDAVTNGPSDNVIGIVLGGM
IPWHANGPAMPAFGSMLNDAQIAAIANYVRTAWGNKGVTDADAAKVLGIRASTPPHDIALADADYLDLPPIASAAARRMN
CPLLTKDLVSPGHGTMEIMQGVTPATLGNRTRMLVAAIRKAYPDITQKRMAEFLTAAYCPVVAQERGLSLGEKKKAIQRF
LSEAASMDTAARKGS

Sequences:

>Translated_575_residues
MPHSKKTIFRRAPLWAATLLIALTCGAVGIEAAFGQEAGGYMPTPTAAKPEAFPALPEPVTKGMSQAEIAQVRRGEYLTA
AADCMPCHTAPGAKPFSGGLSFVTPFGTLYSPNITPAKTTGIGKWTPRQFYNALHYGVSPGSSLGVFPKYLYPAMPYTSY
AKLTRPDVMAIKAYLDAIPAVHAPHAPNRLGFPFNIRAMLLGWRIMFFSTAPVHYKKDWSPAVRNGAYLAEALGHCSECH
SPRNLLFAIKSGDTLAGAQILGEPWYAPNISSSKTYGVGGWSRKDLVDYLHEGGNMNRGSAFGPMQSVVDYSLSQLPRQD
VDDLAAYLQTATPPRENPVKKVALAPGELAQGKALYDDNCAACHQADGKGVKDVFPNLAGNDAVTNGPSDNVIGIVLGGM
IPWHANGPAMPAFGSMLNDAQIAAIANYVRTAWGNKGVTDADAAKVLGIRASTPPHDIALADADYLDLPPIASAAARRMN
CPLLTKDLVSPGHGTMEIMQGVTPATLGNRTRMLVAAIRKAYPDITQKRMAEFLTAAYCPVVAQERGLSLGEKKKAIQRF
LSEAASMDTAARKGS
>Mature_574_residues
PHSKKTIFRRAPLWAATLLIALTCGAVGIEAAFGQEAGGYMPTPTAAKPEAFPALPEPVTKGMSQAEIAQVRRGEYLTAA
ADCMPCHTAPGAKPFSGGLSFVTPFGTLYSPNITPAKTTGIGKWTPRQFYNALHYGVSPGSSLGVFPKYLYPAMPYTSYA
KLTRPDVMAIKAYLDAIPAVHAPHAPNRLGFPFNIRAMLLGWRIMFFSTAPVHYKKDWSPAVRNGAYLAEALGHCSECHS
PRNLLFAIKSGDTLAGAQILGEPWYAPNISSSKTYGVGGWSRKDLVDYLHEGGNMNRGSAFGPMQSVVDYSLSQLPRQDV
DDLAAYLQTATPPRENPVKKVALAPGELAQGKALYDDNCAACHQADGKGVKDVFPNLAGNDAVTNGPSDNVIGIVLGGMI
PWHANGPAMPAFGSMLNDAQIAAIANYVRTAWGNKGVTDADAAKVLGIRASTPPHDIALADADYLDLPPIASAAARRMNC
PLLTKDLVSPGHGTMEIMQGVTPATLGNRTRMLVAAIRKAYPDITQKRMAEFLTAAYCPVVAQERGLSLGEKKKAIQRFL
SEAASMDTAARKGS

Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168
- InterPro:   IPR014353 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.1.99.3 [H]

Molecular weight: Translated: 61274; Mature: 61143

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHSKKTIFRRAPLWAATLLIALTCGAVGIEAAFGQEAGGYMPTPTAAKPEAFPALPEPV
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
TKGMSQAEIAQVRRGEYLTAAADCMPCHTAPGAKPFSGGLSFVTPFGTLYSPNITPAKTT
HCCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
GIGKWTPRQFYNALHYGVSPGSSLGVFPKYLYPAMPYTSYAKLTRPDVMAIKAYLDAIPA
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCC
VHAPHAPNRLGFPFNIRAMLLGWRIMFFSTAPVHYKKDWSPAVRNGAYLAEALGHCSECH
CCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHC
SPRNLLFAIKSGDTLAGAQILGEPWYAPNISSSKTYGVGGWSRKDLVDYLHEGGNMNRGS
CCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
AFGPMQSVVDYSLSQLPRQDVDDLAAYLQTATPPRENPVKKVALAPGELAQGKALYDDNC
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCHHCCCCEECCCC
AACHQADGKGVKDVFPNLAGNDAVTNGPSDNVIGIVLGGMIPWHANGPAMPAFGSMLNDA
HHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCHH
QIAAIANYVRTAWGNKGVTDADAAKVLGIRASTPPHDIALADADYLDLPPIASAAARRMN
HHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHCC
CPLLTKDLVSPGHGTMEIMQGVTPATLGNRTRMLVAAIRKAYPDITQKRMAEFLTAAYCP
CCCHHHHHCCCCCCHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVAQERGLSLGEKKKAIQRFLSEAASMDTAARKGS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PHSKKTIFRRAPLWAATLLIALTCGAVGIEAAFGQEAGGYMPTPTAAKPEAFPALPEPV
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
TKGMSQAEIAQVRRGEYLTAAADCMPCHTAPGAKPFSGGLSFVTPFGTLYSPNITPAKTT
HCCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
GIGKWTPRQFYNALHYGVSPGSSLGVFPKYLYPAMPYTSYAKLTRPDVMAIKAYLDAIPA
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCC
VHAPHAPNRLGFPFNIRAMLLGWRIMFFSTAPVHYKKDWSPAVRNGAYLAEALGHCSECH
CCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHC
SPRNLLFAIKSGDTLAGAQILGEPWYAPNISSSKTYGVGGWSRKDLVDYLHEGGNMNRGS
CCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
AFGPMQSVVDYSLSQLPRQDVDDLAAYLQTATPPRENPVKKVALAPGELAQGKALYDDNC
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCHHCCCCEECCCC
AACHQADGKGVKDVFPNLAGNDAVTNGPSDNVIGIVLGGMIPWHANGPAMPAFGSMLNDA
HHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCHH
QIAAIANYVRTAWGNKGVTDADAAKVLGIRASTPPHDIALADADYLDLPPIASAAARRMN
HHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHCC
CPLLTKDLVSPGHGTMEIMQGVTPATLGNRTRMLVAAIRKAYPDITQKRMAEFLTAAYCP
CCCHHHHHCCCCCCHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVAQERGLSLGEKKKAIQRFLSEAASMDTAARKGS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9352901 [H]