| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is psaL [H]
Identifier: 148243253
GI number: 148243253
Start: 1854183
End: 1854674
Strand: Direct
Name: psaL [H]
Synonym: SynRCC307_2154
Alternate gene names: 148243253
Gene position: 1854183-1854674 (Clockwise)
Preceding gene: 148243252
Following gene: 148243254
Centisome position: 83.34
GC content: 62.4
Gene sequence:
>492_bases ATGACTGTGACTCCCGCCGCCGACCCCTGCGTCGGCAACCTCGCCACACCGGTGAACAGCGGCTATTTCATCAAAGCCCT GATCAACAACCTGCCCTTCTATCGGGCTGGCATCTCACCGAACTTCCGTGGTCTTGAGACCGGTGCCGCCTTCGGCTACC TGCTCTACGGCCCCTTCACCATCTGCGGCCCCCTGCGCAACAGCGAGTTTTCAGCAACCGCTGGCCTGCTGGCTGCAATC GGAGCGGTGCACATCCTCACGCTGCTGTTCCTGCTCTACAACCAGCCCGGCAAGCAGCCCCACATCCCCATGGCGGATGT GACCATCGACAATCCTCCCGCTGATCTGTTCACCCGCACCGGCTGGGCTGACTTCACCAGCGGCTTCTGGCTTGGTGGTT GCGGCGGCGCTGTCTTTGCTTGGTTCCTCTGCGGCACCCTGCACGTCAACACCCTGCTGAATCTTGCCGGTGGCGTTTGG AGCGTTGGCTGA
Upstream 100 bases:
>100_bases TTTTCCCTGCGGTGTTCATCGTTCTGGTTGGAAGCCAAATCACCGCCAGCGAGTGACGGCCCCTGGCCTTTGACCGCCAA CTGAACATTCCTTTCCACTC
Downstream 100 bases:
>100_bases AGCCAACTGCTTTCTCTGACATCCCAAGCCCCTGCCTCGGCGGGGGCTTTTTTAATGGCAAGATCCCTCACACCAGGGGC CAGAACAGCGCTCGATGTCG
Product: photosystem I reaction center protein subunit XI
Products: NA
Alternate protein names: PSI subunit V; PSI-L [H]
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MTVTPAADPCVGNLATPVNSGYFIKALINNLPFYRAGISPNFRGLETGAAFGYLLYGPFTICGPLRNSEFSATAGLLAAI GAVHILTLLFLLYNQPGKQPHIPMADVTIDNPPADLFTRTGWADFTSGFWLGGCGGAVFAWFLCGTLHVNTLLNLAGGVW SVG
Sequences:
>Translated_163_residues MTVTPAADPCVGNLATPVNSGYFIKALINNLPFYRAGISPNFRGLETGAAFGYLLYGPFTICGPLRNSEFSATAGLLAAI GAVHILTLLFLLYNQPGKQPHIPMADVTIDNPPADLFTRTGWADFTSGFWLGGCGGAVFAWFLCGTLHVNTLLNLAGGVW SVG >Mature_162_residues TVTPAADPCVGNLATPVNSGYFIKALINNLPFYRAGISPNFRGLETGAAFGYLLYGPFTICGPLRNSEFSATAGLLAAIG AVHILTLLFLLYNQPGKQPHIPMADVTIDNPPADLFTRTGWADFTSGFWLGGCGGAVFAWFLCGTLHVNTLLNLAGGVWS VG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the psaL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003757 - InterPro: IPR022980 - ProDom: PD005947 [H]
Pfam domain/function: PF02605 PsaL [H]
EC number: NA
Molecular weight: Translated: 17197; Mature: 17066
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTPAADPCVGNLATPVNSGYFIKALINNLPFYRAGISPNFRGLETGAAFGYLLYGPFT CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHCCHH ICGPLRNSEFSATAGLLAAIGAVHILTLLFLLYNQPGKQPHIPMADVTIDNPPADLFTRT HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCC GWADFTSGFWLGGCGGAVFAWFLCGTLHVNTLLNLAGGVWSVG CCCHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TVTPAADPCVGNLATPVNSGYFIKALINNLPFYRAGISPNFRGLETGAAFGYLLYGPFT CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHCCHH ICGPLRNSEFSATAGLLAAIGAVHILTLLFLLYNQPGKQPHIPMADVTIDNPPADLFTRT HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCC GWADFTSGFWLGGCGGAVFAWFLCGTLHVNTLLNLAGGVWSVG CCCHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA