| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148243171
Identifier: 148243171
GI number: 148243171
Start: 1792190
End: 1792801
Strand: Direct
Name: 148243171
Synonym: SynRCC307_2072
Alternate gene names: NA
Gene position: 1792190-1792801 (Clockwise)
Preceding gene: 148243170
Following gene: 148243174
Centisome position: 80.55
GC content: 61.93
Gene sequence:
>612_bases GTGCCTTTTAACGAGTCCAATCGCTTAACCCGTCGCCGTAGTTCTGCTGGTCCAGTCCCCCCGAATCGCCCTCAACGCTT CGGAGCCGAGGGCTATCACCGCAGCGGTCCACGCGCTACTTACTTAACCCTTCCCGACCACGGCAAGGTGTTTGTGGCTG ATCTACCGCAGATGTCGGATGGTCAGCTGCAAAACGTTGGCCGCGAGGCCGCTGATGTGTTCGAAAGCCTCGAGCGCCGC ATCGCTGACCTCGAACAACAACTGGGCAGCAATCCCAGCGACGACAGCATCATTCGGGCGCGCACCAAACGCGATGTCAC CGACCGTTTTCTGCGGGCGATCAGCCAAGAGCAAGAGCGACGCCGCGAAAACCCCCACTTGCAAGCTGCTGCTGGCGAGT CACTGGCACGGGCCTTTCTGGAGCTGGCGCGCCACCGCCTGCCCGGCGCCACCTTTGATTCACTGCTTCAAGAAGCGCTC AACGCCTGCGAGACCCAGCCAGCCGCTGCTCCGCCCCAGGCCAGCCTGCAGAGCATTCCTTCAGAAGCTCTGAGCGATCC CACTGGCGACGATCCGATGGTGCTGCCTGTGGTGCTTAGCCCCGATCTTTGA
Upstream 100 bases:
>100_bases CAGGGGGTTCTCGGCCTGCCGGCAGGGGCCTAAAGCAGGCTGCAGCTCGACAAGGCTGGCAAGATGGTCGGCAAAGAGAA AAAACAGTCGTCTTTGTTAC
Downstream 100 bases:
>100_bases GATCGAGCAAACGGGATGCCAGCAGGGCATCAAGCACCGCCACCAGAGCGCCCACAGACCAGATCACTCGCCAGAGCTGC TGATCAGCCATCAGTGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: Hpt Domain-Containing Protein
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MPFNESNRLTRRRSSAGPVPPNRPQRFGAEGYHRSGPRATYLTLPDHGKVFVADLPQMSDGQLQNVGREAADVFESLERR IADLEQQLGSNPSDDSIIRARTKRDVTDRFLRAISQEQERRRENPHLQAAAGESLARAFLELARHRLPGATFDSLLQEAL NACETQPAAAPPQASLQSIPSEALSDPTGDDPMVLPVVLSPDL
Sequences:
>Translated_203_residues MPFNESNRLTRRRSSAGPVPPNRPQRFGAEGYHRSGPRATYLTLPDHGKVFVADLPQMSDGQLQNVGREAADVFESLERR IADLEQQLGSNPSDDSIIRARTKRDVTDRFLRAISQEQERRRENPHLQAAAGESLARAFLELARHRLPGATFDSLLQEAL NACETQPAAAPPQASLQSIPSEALSDPTGDDPMVLPVVLSPDL >Mature_202_residues PFNESNRLTRRRSSAGPVPPNRPQRFGAEGYHRSGPRATYLTLPDHGKVFVADLPQMSDGQLQNVGREAADVFESLERRI ADLEQQLGSNPSDDSIIRARTKRDVTDRFLRAISQEQERRRENPHLQAAAGESLARAFLELARHRLPGATFDSLLQEALN ACETQPAAAPPQASLQSIPSEALSDPTGDDPMVLPVVLSPDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22340; Mature: 22209
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFNESNRLTRRRSSAGPVPPNRPQRFGAEGYHRSGPRATYLTLPDHGKVFVADLPQMSD CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCC GQLQNVGREAADVFESLERRIADLEQQLGSNPSDDSIIRARTKRDVTDRFLRAISQEQER CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RRENPHLQAAAGESLARAFLELARHRLPGATFDSLLQEALNACETQPAAAPPQASLQSIP HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC SEALSDPTGDDPMVLPVVLSPDL HHHHCCCCCCCCEEEEEEECCCC >Mature Secondary Structure PFNESNRLTRRRSSAGPVPPNRPQRFGAEGYHRSGPRATYLTLPDHGKVFVADLPQMSD CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCC GQLQNVGREAADVFESLERRIADLEQQLGSNPSDDSIIRARTKRDVTDRFLRAISQEQER CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RRENPHLQAAAGESLARAFLELARHRLPGATFDSLLQEALNACETQPAAAPPQASLQSIP HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC SEALSDPTGDDPMVLPVVLSPDL HHHHCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA